Genomic Map
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Target Gene Details
Entrez Gene ID: | 3978 |
Gene Name: | DNA ligase 1 |
Gene Aliases: |
- |
Location: |
Chr.19:48115445-48170603 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 14 - Intron 15 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LIG1 | NM_000234.2 | NP_000225.1 | ||
| NM_001289063.1 | NP_001275992.1 | |||
| NM_001289064.1 | NP_001275993.1 | |||
| NM_001320970.1 | NP_001307899.1 | |||
| NM_001320971.1 | NP_001307900.1 | |||
| NR_110296.1 | ||||
| NR_135497.1 | ||||
| NR_135498.1 | ||||
| NR_135499.1 | ||||
| NR_135500.1 | ||||
| NR_135501.1 | ||||
| XM_017026809.1 | XP_016882298.1 | |||
| AB208791.1 | BAD92028.1 | |||
| AK225863.1 | ||||
| AK297296.1 | ||||
| AK300370.1 | ||||
| AK300607.1 | ||||
| AK303644.1 | ||||
| AK314210.1 | ||||
| BC108318.1 | AAI08319.1 | |||
| BC110622.2 | AAI10623.1 | |||
| M36067.1 | AAA59518.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv833853 | Chr.19:47982539 - 48184317 on Build GRCh38 | Loss |
 LIG1
PLA2G4C-AS1
CABP5
PLA2G4C
BSPH1
C19orf68
ELSPBP1
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
SNAR-C2
DKKL1
GRIN2D
LOC105447645
SNAR-A14
LHB
NTF4
FLT3LG
PTH2
VRK3
MIR4751
SCAF1
SNORD35B
SNAR-A11
RRAS
SNAR-A2
SNAR-A8
PPP1R15A
SNAR-B2
DHDH
SIGLEC11
CYTH2
LOC100287477
SNAR-C3
MIR4750
RPL18
PNKP
SNAR-A7
SIGLEC16
TSKS
BAX
ALDH16A1
C19orf73
TULP2
SNORD33
SULT2B1
BCL2L12
SNAR-A3
RPS11
HRC
SNAR-D
SNAR-A13
BSPH1
AP2A1
GFY
PLEKHA4
RCN3
SNORD32A
NUP62
ZNF114
CCDC155
PLA2G4C
PTOV1-AS2
NUCB1-AS1
CGB2
TEAD2
FAM83E
LOC105372430
MIR6800
TBC1D17
SNAR-A10
CGB5
SNAR-A12
LOC101059948
FUT2
SPACA4
SNAR-A9
BCAT2
CGB7
NTN5
ZNF473
SNRNP70
PTOV1
PRMT1
DBP
FUZ
PRRG2
AKT1S1
LIG1
LIN7B
CGB3
TMEM143
FGF21
KCNJ14
CCDC114
IL4I1
RASIP1
CPT1C
FUT1
GRWD1
SNAR-G2
PRR12
TRPM4
CA11
FLJ26850
PTOV1-AS1
IZUMO1
HSD17B14
KCNA7
SNAR-C5
SNAR-B1
ELSPBP1
MIR5088
SNAR-A5
LMTK3
SNORD35A
SNAR-C4
PIH1D1
SPHK2
MIR150
FTL
SEC1P
ADM5
GYS1
ATF5
KDELR1
RUVBL2
SNAR-A4
PLA2G4C-AS1
MIR4324
NUCB1
MIR6798
NOSIP
RPL13A
MIR6799
CGB1
SNORD34
SNAR-C1
SNAR-A1
CARD8-AS1
LOC101928295
IRF3
CGB8
SLC6A16
CARD8
FCGRT
CD37
SNAR-A6
MAMSTR
SNAR-G1
MED25
CABP5
EMP3
MIR4749
C19orf68
SYNGR4
SLC17A7
PPFIA3
|
| esv34181 | Chr.19:48009377 - 48416682 on Build GRCh38 | Loss |
LIG1
GRIN2D
ZNF114
TMEM143
PLA2G4C
CCDC114
CARD8-AS1
CARD8
KDELR1
PLA2G4C-AS1
CABP5
EMP3
C19orf68
SYNGR4
ELSPBP1
|
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Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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