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See other SCAF1 CNV Assays ›
Gene Symbol
SCAF1
Assay Reference Genome
Location

Chr.19:49646127 on build GRCh38
Cytoband
19q13.33
Assay ID Hs01772466_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 58506

Gene Name:

 SR-related CTD associated factor 1

Gene Aliases:

 SRA1

Location:

 Chr.19:49640483-49658649 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 5 - Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SCAF1 NM_021228.2 NP_067051.2
XM_005259122.4 XP_005259179.1
XM_011527194.2 XP_011525496.1
XM_017027083.1 XP_016882572.1
AK024444.1
BC011662.2 AAH11662.2
BC053992.1 AAH53992.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469715 Chr.19:49572544 - 49730286 on Build GRCh38 Gain+Loss RRAS NOSIP PRRG2 IRF3 BCL2L12 SCAF1 ADM5 CPT1C MIR5088 PRR12 PRMT1
nsv833865 Chr.19:49572545 - 49730286 on Build GRCh38 Gain+Loss RRAS NOSIP PRRG2 IRF3 BCL2L12 SCAF1 ADM5 CPT1C MIR5088 PRR12 PRMT1
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss SLC17A7 RRAS PTOV1-AS1 SNAR-B1 GFY FUT2 MIR6798 SNAR-A6 CCDC114 SEC1P SNAR-A3 ELSPBP1 PRMT1 MIR6799 C19orf73 BAX MAMSTR SNORD32A SNRNP70 FCGRT SNAR-A12 SNAR-A13 NUCB1 SIGLEC11 SNAR-A8 NUCB1-AS1 SNAR-G2 NTF4 ADM5 SNAR-D CARD8 PLEKHA4 PRR12 AKT1S1 SNAR-C2 DHDH SNAR-A10 RCN3 ATF5 KCNA7 SNAR-G1 CGB7 PPP1R15A SNAR-A11 SNAR-C5 PTOV1 KDELR1 SNAR-A5 ALDH16A1 CABP5 CARD8-AS1 LOC100287477 PTOV1-AS2 TSKS SNAR-C3 LOC105372430 CGB2 PLA2G4C-AS1 AP2A1 NTN5 RPL18 SNAR-C1 GRWD1 HRC CA11 CD37 SNAR-A7 RUVBL2 BCAT2 NUP62 CGB3 LMTK3 LIG1 TULP2 SNAR-A2 LOC101059948 SNAR-A9 MED25 ZNF473 MIR150 IRF3 LOC101928295 FUT1 RPL13A EMP3 IL4I1 MIR5088 LOC105447645 FTL SNAR-B2 PTH2 SYNGR4 RPS11 C19orf68 PIH1D1 VRK3 CGB5 MIR4750 SPHK2 SNAR-C4 FUZ SCAF1 GYS1 FLJ26850 SNORD35A SIGLEC16 MIR4749 SULT2B1 NOSIP SNAR-A14 MIR4751 MIR4324 SNAR-A4 SNORD35B GRIN2D TMEM143 KCNJ14 SNORD34 BSPH1 HSD17B14 FGF21 CPT1C MIR6800 DBP LHB TEAD2 SNORD33 BCL2L12 ZNF114 LIN7B DKKL1 CGB1 TBC1D17 PNKP SLC6A16 PRRG2 CCDC155 RASIP1 FAM83E TRPM4 PLA2G4C FLT3LG CYTH2 IZUMO1 SNAR-A1 SPACA4 CGB8 PPFIA3
nsv817854 Chr.19:49618821 - 49726387 on Build GRCh38 Gain RRAS IRF3 BCL2L12 SCAF1 ADM5 CPT1C MIR5088 PRR12 PRMT1
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion RRAS MED25 NOSIP PTOV1-AS1 IRF3 MIR4751 PTOV1 IL4I1 PTOV1-AS2 CPT1C MIR6800 TSKS MIR5088 PRMT1 MIR6799 AP2A1 BCL2L12 MIR4750 TBC1D17 PNKP PRRG2 FUZ NUP62 SCAF1 ADM5 MIR4749 PRR12 AKT1S1 ATF5
nsv833864 Chr.19:49551790 - 49733819 on Build GRCh38 Gain RRAS NOSIP PRRG2 IRF3 BCL2L12 SCAF1 ADM5 CPT1C MIR5088 PRR12 PRMT1
nsv1160655 Chr.19:49489110 - 49841830 on Build GRCh38 Deletion RRAS MED25 NOSIP PTOV1-AS1 MIR150 IRF3 SNORD35B SNORD34 RPL13A CPT1C MIR6800 TSKS MIR5088 PRMT1 MIR6799 RPS11 SNORD32A SNORD33 AP2A1 BCL2L12 FCGRT PRRG2 FUZ SCAF1 ADM5 SNORD35A PRR12 RCN3
nsv828578 Chr.19:49560777 - 49680548 on Build GRCh38 Loss RRAS NOSIP PRRG2 IRF3 BCL2L12 SCAF1 PRR12 PRMT1
nsv579908 Chr.19:49645135 - 49663393 on Build GRCh38 Loss IRF3 SCAF1

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