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See other SCAF1 CNV Assays ›
Gene Symbol
SCAF1
Assay Reference Genome
Location

Chr.19:49646127 on build GRCh38
Cytoband
19q13.33
Assay ID Hs01772466_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 58506

Gene Name:

 SR-related CTD associated factor 1

Gene Aliases:

 SRA1

Location:

 Chr.19:49640483-49658649 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 5 - Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SCAF1 NM_021228.2 NP_067051.2
XM_005259122.4 XP_005259179.1
XM_011527194.2 XP_011525496.1
XM_017027083.1 XP_016882572.1
AK024444.1
BC011662.2 AAH11662.2
BC053992.1 AAH53992.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469715 Chr.19:49572544 - 49730286 on Build GRCh38 Gain+Loss PRR12 IRF3 BCL2L12 ADM5 SCAF1 MIR5088 NOSIP PRRG2 CPT1C PRMT1 RRAS
nsv833865 Chr.19:49572545 - 49730286 on Build GRCh38 Gain+Loss PRR12 IRF3 BCL2L12 ADM5 SCAF1 MIR5088 NOSIP PRRG2 CPT1C PRMT1 RRAS
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss PTH2 FGF21 MIR4324 LOC101928295 CGB1 FTL LOC105447645 SNAR-A12 BCL2L12 MIR6799 LIG1 CARD8 MIR4751 GYS1 IZUMO1 SLC6A16 CCDC155 SNAR-A1 EMP3 IL4I1 MIR4749 AP2A1 NTN5 SNORD35A NTF4 ELSPBP1 PLEKHA4 PRRG2 LOC105372430 SNAR-B2 SNORD33 PRMT1 DKKL1 CGB3 KCNA7 AKT1S1 TSKS CD37 SNORD32A PNKP KCNJ14 MIR4750 SNAR-G2 FAM83E CA11 ZNF114 ALDH16A1 SNORD34 LMTK3 FUZ NOSIP SNAR-A5 HRC SNAR-C4 TULP2 LOC101059948 PRR12 SNAR-A6 PIH1D1 SNAR-D KDELR1 ATF5 SPACA4 LHB SNAR-A9 SIGLEC16 FUT1 C19orf68 SNAR-C2 CGB8 CPT1C RUVBL2 SNAR-C5 SNAR-A8 BSPH1 RASIP1 CARD8-AS1 LOC100287477 TBC1D17 SNAR-A10 RRAS LIN7B CGB7 PLA2G4C GRWD1 SNORD35B MIR6798 SNAR-C3 FLJ26850 HSD17B14 SEC1P SNAR-A11 SNAR-A14 GFY PTOV1 SNRNP70 MIR150 SPHK2 MIR6800 DBP SYNGR4 DHDH SLC17A7 FLT3LG RPS11 RPL13A PPP1R15A NUCB1-AS1 PLA2G4C-AS1 FUT2 MIR5088 NUP62 SNAR-A4 RCN3 ZNF473 CGB2 FCGRT IRF3 BCAT2 MED25 PTOV1-AS1 BAX SNAR-C1 CGB5 VRK3 SNAR-A3 TEAD2 ADM5 SNAR-A2 SCAF1 SNAR-G1 SNAR-A7 CCDC114 SNAR-A13 PTOV1-AS2 RPL18 TRPM4 PPFIA3 SIGLEC11 SNAR-B1 NUCB1 TMEM143 SULT2B1 C19orf73 CYTH2 CABP5 GRIN2D MAMSTR
nsv470150 Chr.19:49618821 - 49856789 on Build GRCh38 Gain PRR12 IRF3 MIR4749 PTOV1-AS2 AP2A1 MED25 PTOV1-AS1 CPT1C PRMT1 PTOV1 BCL2L12 ADM5 MIR6799 MIR6800 SCAF1 FUZ MIR5088 TSKS RRAS
nsv833864 Chr.19:49551790 - 49733819 on Build GRCh38 Gain PRR12 IRF3 BCL2L12 ADM5 SCAF1 MIR5088 NOSIP PRRG2 CPT1C PRMT1 RRAS
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion IRF3 MED25 PTOV1-AS1 PNKP MIR4750 PTOV1 BCL2L12 ADM5 MIR6799 MIR6800 SCAF1 FUZ MIR4751 NOSIP PRR12 IL4I1 ATF5 MIR4749 PTOV1-AS2 AP2A1 PRRG2 CPT1C PRMT1 MIR5088 NUP62 AKT1S1 TSKS TBC1D17 RRAS
nsv1160655 Chr.19:49489110 - 49841830 on Build GRCh38 Deletion IRF3 MED25 PTOV1-AS1 SNORD35B BCL2L12 SNORD34 MIR150 ADM5 MIR6799 MIR6800 SCAF1 FUZ NOSIP PRR12 AP2A1 SNORD35A RPS11 PRRG2 RPL13A CPT1C SNORD33 PRMT1 MIR5088 RCN3 TSKS FCGRT RRAS SNORD32A
nsv828578 Chr.19:49560777 - 49680548 on Build GRCh38 Loss PRR12 IRF3 BCL2L12 SCAF1 NOSIP PRRG2 PRMT1 RRAS
nsv579908 Chr.19:49645135 - 49663393 on Build GRCh38 Loss IRF3 SCAF1

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