Hs01780486_cn

• Gene Symbol: CABP5
• Assay Reference Genome Location: Chr.19:48034231 on build GRCh38
• Cytoband: 19q13.33

Target Gene Details

• Entrez Gene ID: 56344
• Gene Name: calcium binding protein 5
• Gene Aliases: CABP3
• Location: Chr.19:48029383-48048342 on Build GRCh38
• Assay Gene Location: Overlaps Intron 7 - Exon 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CABP5	NM_019855.4			NP_062829.1
	XM_017026992.1			XP_016882481.1
	AF169159.1			AAF25793.1
	BC126133.1
	BC126135.1
	BQ185108.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv833853	Chr.19:47982539 - 48184317 on Build GRCh38	Loss	PLA2G4C-AS1 BSPH1 C19orf68 PLA2G4C LIG1 CABP5 ELSPBP1
nsv9739	Chr.19:47901840 - 50143063 on Build GRCh38	Gain+Loss	FAM83E CA11 KCNJ14 IL4I1 SNAR-C3 MIR5088 GFY CCDC155 BCAT2 TSKS SNAR-C2 IZUMO1 SNAR-C4 MIR150 FUT1 TBC1D17 SNAR-A3 MIR4751 SNAR-A7 KDELR1 SNAR-A4 LOC105447645 DKKL1 RASIP1 SCAF1 SPACA4 CCDC114 SNAR-G1 CD37 NUCB1 CGB3 RUVBL2 SNAR-A14 GRIN2D LHB NUP62 FUT2 DHDH SNAR-D FCGRT ALDH16A1 SNAR-A2 LOC100287477 CGB2 SNAR-A10 SNAR-A8 PRMT1 LIN7B CPT1C RRAS C19orf73 MED25 PRRG2 BCL2L12 SEC1P SNAR-A5 MIR6799 MIR6798 MIR4324 SNORD35A LOC101928295 FLT3LG HRC SNRNP70 SNAR-A12 TULP2 CARD8 ZNF473 C19orf68 SLC6A16 SNORD33 NTN5 RPS11 SNAR-A9 PPFIA3 SIGLEC16 VRK3 MAMSTR NUCB1-AS1 SIGLEC11 SNAR-C5 TRPM4 CARD8-AS1 SULT2B1 SNORD34 RCN3 PRR12 PNKP PTOV1-AS1 NTF4 LOC105372430 NOSIP SNAR-B2 IRF3 ATF5 CGB5 PTH2 LOC101059948 SNAR-A1 BAX CGB7 KCNA7 FLJ26850 GYS1 SNAR-A11 MIR6800 CGB8 ADM5 BSPH1 SNAR-C1 SNAR-B1 LIG1 CABP5 AKT1S1 DBP CGB1 TMEM143 PLA2G4C-AS1 RPL18 GRWD1 PTOV1-AS2 ZNF114 FUZ MIR4750 SYNGR4 SNORD32A ELSPBP1 PTOV1 AP2A1 TEAD2 LMTK3 SNAR-G2 HSD17B14 SNAR-A6 PLA2G4C FGF21 PIH1D1 PLEKHA4 PPP1R15A RPL13A CYTH2 MIR4749 SLC17A7 SNORD35B FTL SPHK2 SNAR-A13 EMP3
esv34181	Chr.19:48009377 - 48416682 on Build GRCh38	Loss	GRIN2D PLA2G4C KDELR1 LIG1 CABP5 CARD8 TMEM143 PLA2G4C-AS1 C19orf68 CCDC114 ZNF114 CARD8-AS1 SYNGR4 ELSPBP1 EMP3
dgv3611n100	Chr.19:48024325 - 48081406 on Build GRCh38	Gain	PLA2G4C-AS1 PLA2G4C CABP5 ELSPBP1
nsv1058785	Chr.19:48004749 - 48075632 on Build GRCh38	Gain	PLA2G4C-AS1 PLA2G4C CABP5 ELSPBP1
nsv428367	Chr.19:47788899 - 48039659 on Build GRCh38	Gain+Loss	SNAR-A3 BSPH1 SNAR-C1 SNAR-A12 SNAR-A2 CABP5 SNAR-A1 LINC01595 SNAR-C3 SULT2A1 SNAR-C5 TPRX1 SNAR-A13 SNAR-C2 SNAR-C4 ELSPBP1 CRX
esv3893228	Chr.19:48002211 - 48072851 on Build GRCh38	Loss	PLA2G4C-AS1 PLA2G4C CABP5 ELSPBP1
dgv3612n100	Chr.19:48027173 - 48037765 on Build GRCh38	Gain	CABP5
nsv579901	Chr.19:48033582 - 48046691 on Build GRCh38	Loss	CABP5
nsv1058622	Chr.19:47798576 - 48077885 on Build GRCh38	Gain	SNAR-A3 BSPH1 PLA2G4C SNAR-C1 SNAR-A12 SNAR-A2 CABP5 SNAR-A1 LINC01595 SNAR-C3 PLA2G4C-AS1 SULT2A1 SNAR-C5 TPRX1 SNAR-A13 SNAR-C2 SNAR-C4 ELSPBP1 CRX

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

signal transduction

Function(s)

calcium ion binding
protein binding