Genomic Map
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Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SCAF1 | NM_021228.2 | 7 | 1207 | NP_067051.2 |
| XM_005259122.4 | 7 | 1490 | XP_005259179.1 | |
| XM_011527194.2 | 7 | 1132 | XP_011525496.1 | |
| XM_017027083.1 | 4 | 934 | XP_016882572.1 | |
| AK024444.1 | 7 | 1207 | ||
| BC011662.2 | AAH11662.2 | |||
| BC053992.1 | 6 | 1094 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss |
 PRMT1
IRF3
PRR12
NOSIP
SCAF1
PRRG2
RRAS
CPT1C
ADM5
BCL2L12
MIR5088
|
| nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss |
PRMT1
IRF3
PRR12
NOSIP
SCAF1
PRRG2
RRAS
CPT1C
ADM5
BCL2L12
MIR5088
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
SNAR-A7
GFY
KDELR1
LIN7B
CGB2
SNAR-C3
SPACA4
FAM83E
PTH2
KCNJ14
PIH1D1
SNAR-B1
EMP3
FUT1
MIR6799
GYS1
MIR6800
SIGLEC11
FUZ
PRRG2
ELSPBP1
LOC105447645
CYTH2
BCL2L12
GRIN2D
C19orf73
SPHK2
VRK3
SNAR-A12
AKT1S1
SNAR-A4
BAX
SNAR-G2
IZUMO1
SLC17A7
SNORD35A
CGB3
MIR5088
CCDC114
FGF21
SNORD33
AP2A1
CGB8
CCDC155
GRWD1
CABP5
C19orf68
LOC101059948
SNAR-D
SNAR-A14
TMEM143
IRF3
TBC1D17
SEC1P
MAMSTR
SNAR-G1
MIR4324
SNAR-A3
CARD8
NOSIP
ZNF114
BCAT2
SNAR-A1
FCGRT
ATF5
KCNA7
SNAR-A2
MIR6798
SYNGR4
PRR12
FLT3LG
LOC105372430
PTOV1-AS2
HSD17B14
RPS11
TRPM4
SNAR-C4
SNAR-A11
SNORD32A
CGB1
DKKL1
LMTK3
SNAR-C2
SNAR-A10
CGB5
PPFIA3
NTF4
SNAR-A5
MIR4750
RASIP1
SULT2B1
MIR4749
SNORD34
CARD8-AS1
SLC6A16
RCN3
NUCB1-AS1
PLA2G4C
DBP
CA11
LOC100287477
SNAR-A8
SNAR-C1
SNAR-A6
PLA2G4C-AS1
PLEKHA4
FUT2
RUVBL2
MED25
CD37
FLJ26850
RPL18
SNRNP70
ZNF473
MIR150
ALDH16A1
LIG1
SNAR-C5
RPL13A
TSKS
SNAR-B2
TULP2
PTOV1-AS1
PRMT1
LOC101928295
NUCB1
LHB
PPP1R15A
CPT1C
SNAR-A9
MIR4751
FTL
PNKP
IL4I1
SNORD35B
TEAD2
SCAF1
RRAS
NUP62
SIGLEC16
HRC
BSPH1
DHDH
PTOV1
CGB7
NTN5
ADM5
SNAR-A13
|
| nsv470150 | Chr.19:49618821 - 49856789 on Build GRCh38 | Gain |
PRMT1
MIR4749
IRF3
MIR6800
PRR12
MED25
FUZ
PTOV1-AS2
CPT1C
BCL2L12
MIR5088
AP2A1
SCAF1
RRAS
TSKS
PTOV1
ADM5
MIR6799
PTOV1-AS1
|
| nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss |
IRF3
SCAF1
|
| nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain |
PRMT1
IRF3
PRR12
NOSIP
SCAF1
PRRG2
RRAS
CPT1C
ADM5
BCL2L12
MIR5088
|
| nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion |
PRR12
MED25
PTOV1-AS2
MIR5088
AP2A1
TSKS
MIR6799
PTOV1-AS1
PRMT1
MIR4750
MIR4749
IRF3
MIR6800
TBC1D17
FUZ
PRRG2
CPT1C
MIR4751
PNKP
IL4I1
BCL2L12
NOSIP
SCAF1
RRAS
NUP62
AKT1S1
PTOV1
ADM5
ATF5
|
| nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion |
PRR12
MED25
SNORD35A
RPS11
MIR5088
MIR150
SNORD33
SNORD32A
AP2A1
RPL13A
TSKS
MIR6799
PTOV1-AS1
PRMT1
SNORD34
IRF3
MIR6800
RCN3
FUZ
PRRG2
CPT1C
BCL2L12
SNORD35B
NOSIP
SCAF1
RRAS
FCGRT
ADM5
|
| nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss |
PRMT1
IRF3
PRR12
NOSIP
SCAF1
PRRG2
RRAS
BCL2L12
|
| nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss |
IRF3
SCAF1
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Molecular Function -
RNA metabolism protein
RNA processing factor
RNA splicing factor
nucleic acid metabolism protein
Gene Ontology Categories:
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