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See other SCAF1 CNV Assays ›
Gene Symbol
SCAF1
Assay Reference Genome
Location

Chr.19:49646728 on build GRCh38
Cytoband
19q13.33
Assay ID Hs01787096_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 58506

Gene Name:

 SR-related CTD associated factor 1

Gene Aliases:

 SRA1

Location:

 Chr.19:49640483-49658649 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 7 - Exon 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SCAF1 NM_021228.2 NP_067051.2
XM_005259122.4 XP_005259179.1
XM_011527194.2 XP_011525496.1
XM_017027083.1 XP_016882572.1
AK024444.1
BC011662.2 AAH11662.2
BC053992.1 AAH53992.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469715 Chr.19:49572544 - 49730286 on Build GRCh38 Gain+Loss PRR12 ADM5 IRF3 BCL2L12 RRAS SCAF1 MIR5088 PRRG2 CPT1C PRMT1 NOSIP
nsv833865 Chr.19:49572545 - 49730286 on Build GRCh38 Gain+Loss PRR12 ADM5 IRF3 BCL2L12 RRAS SCAF1 MIR5088 PRRG2 CPT1C PRMT1 NOSIP
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss SNORD35A DHDH SLC17A7 IRF3 MIR5088 MIR4749 C19orf73 FUZ SNAR-C4 CCDC155 SEC1P SNAR-A11 BSPH1 FLJ26850 MIR150 NUP62 SNAR-A5 BAX TEAD2 LOC101059948 LHB ATF5 NOSIP LOC105372430 KCNJ14 GRIN2D GRWD1 CGB5 CGB8 FGF21 AP2A1 SLC6A16 PPFIA3 SCAF1 SPHK2 CGB2 SNAR-A12 SNAR-G1 SNAR-C3 CGB3 RCN3 LMTK3 LIG1 KDELR1 SNORD33 SNAR-G2 FLT3LG PTOV1-AS2 SYNGR4 NTN5 PLEKHA4 SNAR-D FTL ADM5 TMEM143 MIR4751 PNKP VRK3 FUT2 HRC MED25 PRRG2 MIR6799 IL4I1 ALDH16A1 CCDC114 SNAR-A13 PLA2G4C-AS1 RASIP1 PIH1D1 SNAR-A6 IZUMO1 MIR4324 SNAR-A1 PLA2G4C HSD17B14 CGB1 SNAR-A8 EMP3 BCAT2 GYS1 CA11 MAMSTR RPL13A RUVBL2 NUCB1 ZNF114 RPS11 PRR12 NUCB1-AS1 CYTH2 SNAR-A2 PTOV1-AS1 PTOV1 PPP1R15A TULP2 BCL2L12 RRAS SNORD35B CD37 TSKS CPT1C MIR6798 SNAR-C5 LOC101928295 TRPM4 CGB7 SNAR-B1 SNRNP70 SNAR-C2 PRMT1 C19orf68 SNORD34 SPACA4 SNAR-A10 CABP5 SNAR-A7 SNAR-A4 FAM83E CARD8-AS1 PTH2 SNORD32A ELSPBP1 SIGLEC16 AKT1S1 GFY SNAR-A14 MIR4750 LIN7B CARD8 SULT2B1 TBC1D17 LOC100287477 DKKL1 MIR6800 SIGLEC11 SNAR-B2 SNAR-A3 FCGRT RPL18 KCNA7 ZNF473 SNAR-A9 DBP FUT1 LOC105447645 SNAR-C1 NTF4
nsv470150 Chr.19:49618821 - 49856789 on Build GRCh38 Gain IRF3 BCL2L12 RRAS MIR6800 MIR5088 MIR4749 FUZ PTOV1-AS2 TSKS CPT1C AP2A1 PRR12 ADM5 SCAF1 MED25 MIR6799 PTOV1-AS1 PRMT1 PTOV1
nsv833864 Chr.19:49551790 - 49733819 on Build GRCh38 Gain PRR12 ADM5 IRF3 BCL2L12 RRAS SCAF1 MIR5088 PRRG2 CPT1C PRMT1 NOSIP
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion IRF3 MIR5088 MIR4749 FUZ PTOV1-AS2 NUP62 PRR12 ADM5 MIR4751 PNKP AKT1S1 MED25 MIR4750 PRRG2 MIR6799 PTOV1-AS1 IL4I1 ATF5 NOSIP PTOV1 TBC1D17 BCL2L12 RRAS MIR6800 TSKS CPT1C AP2A1 SCAF1 PRMT1
nsv1160655 Chr.19:49489110 - 49841830 on Build GRCh38 Deletion SNORD35A IRF3 RCN3 RPL13A MIR5088 SNORD34 SNORD33 FUZ MIR150 RPS11 PRR12 ADM5 SNORD32A MED25 PRRG2 MIR6799 PTOV1-AS1 NOSIP BCL2L12 RRAS MIR6800 SNORD35B TSKS CPT1C AP2A1 FCGRT SCAF1 PRMT1
nsv828578 Chr.19:49560777 - 49680548 on Build GRCh38 Loss PRR12 IRF3 BCL2L12 RRAS SCAF1 PRRG2 PRMT1 NOSIP
nsv579908 Chr.19:49645135 - 49663393 on Build GRCh38 Loss IRF3 SCAF1

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