Genomic Map
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Target Gene Details
Entrez Gene ID: | 4072 |
Gene Name: | epithelial cell adhesion molecule |
Gene Aliases: |
DIAR5, EGP-2, EGP314, EGP40, ESA, HNPCC8, KS1/4, KSA, M4S1, MIC18, MK-1, TACSTD1, TROP1 |
Location: |
Chr.2:47369148-47387028 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 1 - Intron 1 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| EPCAM | NM_002354.2 | NP_002345.2 | ||
| AK026585.1 | ||||
| BC014785.1 | AAH14785.1 | |||
| BP262680.1 | ||||
| CR542259.1 | CAG47055.1 | |||
| CR542283.1 | CAG47078.1 | |||
| DA963872.1 | ||||
| DB044092.1 | ||||
| M26481.1 | AAA59543.1 | |||
| M32306.1 | AAA35723.1 | |||
| M32325.1 | AAA36151.1 | |||
| M33011.1 | AAA35861.1 | |||
| X14758.1 | CAA32870.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv999576 | Chr.2:47278977 - 47546821 on Build GRCh38 | Gain |
 MSH2
LOC101927043
KCNK12
EPCAM
MIR559
BCYRN1
HCG2040054
|
| nsv1009586 | Chr.2:47325567 - 47394348 on Build GRCh38 | Gain |
LOC101927043
EPCAM
MIR559
BCYRN1
|
| nsv1004828 | Chr.2:46829710 - 47587343 on Build GRCh38 | Gain |
MSH2
LOC101927043
LINC01119
MCFD2
TTC7A
KCNK12
EPCAM
MIR559
BCYRN1
HCG2040054
C2orf61
CALM2
|
| nsv520660 | Chr.2:47362895 - 47373967 on Build GRCh38 | Loss |
EPCAM
|
| esv3583781 | Chr.2:47328150 - 47371167 on Build GRCh38 | Loss |
LOC101927043
EPCAM
BCYRN1
|
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Additional Information:
For this assay, SNP(s) [rs534099440] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Non-exonic
DGV Variation
|
Gene Ontology Categories:
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