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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2288128 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01864110_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Exon 21
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 21 3614 NP_001080.2
AB070929.1 18 2944 BAB86781.1
AB210044.1 20 3440 BAE06126.1
BC140895.1 18 2939
BC146866.1 18 2939
BC151840.1 21 3596
U78735.1 21 3461 AAC50967.1
X97187.1 20 3249 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication AXIN1 LOC105371184 CCDC78 LOC652276 TRAF7 HAGHL CEMP1 ECI1 HBQ1 LOC100287175 MEIOB LUC7L NDUFB10 HBA1 MLST8 ABCA3 MIR3178 TPSD1 MIR6768 PRR25 MIR6859-4 LOC100134368 HBA2 CAPN15 FAM234A RPS2 HBZ RHBDF1 MIR6767 RPL23AP5 TBL3 LINC00254 PDPK1 LOC105371045 CHTF18 LINC00235 TBC1D24 LMF1 LOC105371046 LOC105371047 CACNA1H CASKIN1 SNORD60 RPUSD1 HAGH MIR1225 TPSB2 CCDC154 METTL26 MPG FAHD1 ERVK13-1 MIR3176 BRICD5 RNF151 SNORA64 IGFALS MIR6511B1 TSR3 WFIKKN1 IFT140 EME2 NTHL1 LOC101929280 PIGQ CCNF MSLN HN1L DNASE1L2 LMF1-AS1 FBXL16 PDIA2 TELO2 MSRB1 GNG13 WDR90 MIR662 FLJ42627 PRSS27 RGS11 NME4 LOC107984876 C1QTNF8 NME3 RHOT2 JMJD8 BAIAP3 HBM LOC107987233 NPRL3 C16orf59 ATP6V0C MIR3177 SNORA10 LOC105371049 CRAMP1 E4F1 AMDHD2 RAB11FIP3 SLC9A3R2 MIR3180-5 CLCN7 LOC729652 ABCA17P TPSG1 STUB1 MIR5587 RNPS1 TSC2 MIR4516 FAM173A NHLRC4 NUBP2 MIR4717 TMEM8A RPL3L RHBDL1 PRR35 LOC106660606 ARHGDIG PTX4 MCRIP2 NPW DECR2 MAPK8IP3 GFER PRSS29P METRN UNKL PGP SYNGR3 SNHG19 KCTD5 SPSB3 MRPL28 HS3ST6 NOXO1 SNHG9 C16orf91 GNPTG LOC105371038 SNORA78 TMEM204 RAB40C ZNF598 NTN3 MIR3677 WASIR2 SOX8 POLR3K WDR24 SNRNP25 UBE2I MRPS34 MIR940 TPSAB1 NARFL SSTR5 RAB26 PKD1 DDX11L10 SSTR5-AS1
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss TRAF7 LOC106660606 BRICD5 ECI1 NPW GFER PGP SYNGR3 LOC105371049 SNHG19 E4F1 MIR6511B1 MLST8 ABCA3 SLC9A3R2 MIR3180-5 NOXO1 NTHL1 DNASE1L2 TBL3 ZNF598 MIR3677 RNPS1 TSC2 MIR4516 MIR940 CASKIN1 SNORD60 MIR4717 RAB26 PKD1 MIR1225
nsv571201 Chr.16:2255538 - 2365929 on Build GRCh38 Loss MIR3677 RNPS1 ABCA17P LOC106660606 MIR940 ABCA3 MIR4717
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain LOC652276 TRAF7 LOC106660606 CEMP1 BRICD5 ECI1 C16orf59 ATP6V0C PGP LOC105371049 SNHG19 E4F1 AMDHD2 MIR6511B1 MLST8 ABCA3 MIR3178 MIR3180-5 MIR6768 CCNF DNASE1L2 MIR6767 LOC729652 ABCA17P PDPK1 TBC1D24 NTN3 MIR3677 RNPS1 TSC2 MIR4516 MIR940 CASKIN1 SNORD60 MIR4717 RAB26 PKD1 MIR1225
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion DNASE1L2 TRAF7 LOC106660606 BRICD5 ECI1 MIR3677 PGP SNHG19 E4F1 RNPS1 MIR940 MLST8 CASKIN1 SNORD60 ABCA3 MIR4717 RAB26
nsv571202 Chr.16:2278649 - 2289619 on Build GRCh38 Loss ABCA3

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