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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2288128 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01864110_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Exon 21
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 21 3614 NP_001080.2
AB070929.1 18 2944 BAB86781.1
AB210044.1 20 3440 BAE06126.1
BC140895.1 18 2939
BC146866.1 18 2939
BC151840.1 21 3596
U78735.1 21 3461 AAC50967.1
X97187.1 20 3249 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication TSR3 WDR90 LOC100134368 LOC100287175 NME3 LOC105371045 NHLRC4 SNORA78 PRSS29P PTX4 LUC7L MIR5587 C16orf59 MAPK8IP3 RPUSD1 LINC00235 SNORD60 MIR3176 GNG13 TPSD1 TBC1D24 RNPS1 FLJ42627 CEMP1 MIR1225 CACNA1H MSRB1 PRR25 MIR4516 AMDHD2 METTL26 MIR6511B1 PRSS27 MIR3177 TPSB2 MLST8 MRPS34 RPL23AP5 ARHGDIG PIGQ TRAF7 PDPK1 CCNF HBZ NTN3 RGS11 TMEM204 LOC106660606 TSC2 LMF1-AS1 MIR3677 LOC107984876 MEIOB GNPTG SYNGR3 LOC101929280 ERVK13-1 SNORA10 DECR2 LINC00254 HAGH CASKIN1 HBA2 MIR3178 RHBDF1 RHBDL1 NPW HN1L RAB26 CHTF18 BAIAP3 NOXO1 TPSG1 SPSB3 SNORA64 WDR24 NDUFB10 TELO2 LOC107987233 CCDC154 HAGHL LOC105371184 MSLN TMEM8A POLR3K HBM GFER FAHD1 ATP6V0C SNHG19 MIR4717 CAPN15 RNF151 MIR3180-5 LMF1 LOC652276 RPL3L MIR6768 AXIN1 SNRNP25 PDIA2 STUB1 KCTD5 PKD1 FBXL16 C1QTNF8 FAM173A HS3ST6 RPS2 SNHG9 LOC105371046 HBA1 PGP ECI1 TBL3 DDX11L10 RAB40C WFIKKN1 EME2 PRR35 ZNF598 MIR940 LOC729652 TPSAB1 NPRL3 IFT140 WASIR2 ABCA3 NUBP2 CLCN7 CRAMP1 MIR6767 SOX8 ABCA17P IGFALS E4F1 MIR662 DNASE1L2 BRICD5 CCDC78 SSTR5 MRPL28 MPG LOC105371047 METRN LOC105371038 NTHL1 UBE2I C16orf91 UNKL MIR6859-4 LOC105371049 HBQ1 NME4 JMJD8 NARFL RAB11FIP3 SLC9A3R2 SSTR5-AS1 MCRIP2 FAM234A RHOT2
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss ZNF598 MIR940 GFER TRAF7 LOC106660606 TSC2 ABCA3 MIR3677 SNHG19 MIR4717 SYNGR3 E4F1 SNORD60 CASKIN1 MIR3180-5 DNASE1L2 RNPS1 NPW BRICD5 MIR1225 NTHL1 MIR4516 PKD1 RAB26 MIR6511B1 LOC105371049 NOXO1 MLST8 PGP ECI1 SLC9A3R2 TBL3
nsv457353 Chr.16:2255538 - 2365929 on Build GRCh38 Loss ABCA17P MIR940 MIR4717 LOC106660606 ABCA3 MIR3677 RNPS1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR940 TRAF7 LOC729652 PDPK1 CCNF NTN3 LOC106660606 TSC2 ABCA3 MIR3677 MIR6767 ATP6V0C C16orf59 ABCA17P SNHG19 MIR4717 E4F1 SNORD60 CASKIN1 MIR3180-5 DNASE1L2 TBC1D24 MIR3178 RNPS1 BRICD5 CEMP1 MIR1225 LOC652276 MIR6768 MIR4516 AMDHD2 PKD1 RAB26 MIR6511B1 LOC105371049 MLST8 PGP ECI1
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion MIR940 TRAF7 LOC106660606 ABCA3 RAB26 MIR3677 SNHG19 MIR4717 MLST8 E4F1 SNORD60 PGP ECI1 CASKIN1 DNASE1L2 RNPS1 BRICD5
nsv571202 Chr.16:2278649 - 2289619 on Build GRCh38 Loss ABCA3

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