Name: [Hs01895739_cn] [ARHGEF1]
Creator: Thermo Fisher Scientific
Keywords: [ARHGEF1] Assay, [Rho guanine nucleotide exchange factor 1] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	9138
Gene Name:	Rho guanine nucleotide exchange factor 1
Gene Aliases:	GEF1, LBCL2, LSC, P115-RHOGEF, SUB1.5
Location:	Chr.19:41883200-41907454 on Build GRCh38
Assay Gene Location:	Within Exon 18

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ARHGEF1	NM_004706.3	15	1433	NP_004697.2
	NM_198977.1	14	1334	NP_945328.1
	NM_199002.1	15	1458	NP_945353.1
	XM_005259386.4	17	1965	XP_005259443.1
	XM_005259390.4	15	1781	XP_005259447.1
	XM_011527468.2	16	1793	XP_011525770.1
	AL832294.1	6	597
	BC005155.2	12	1171	AAH05155.2
	BC011726.2	14	1309	AAH11726.1
	BC034013.1	15	1389	AAH34013.2
	BC035127.1	2	971	AAH35127.1
	BC067262.1	14	1277	AAH67262.1
	BT007421.1	12	1147	AAP36089.1
	U64105.1	15	1378	AAB17896.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv520239	Chr.19:41853387 - 42426852 on Build GRCh38	Loss	GRIK5 ATP1A3 POU2F2 MIR4323 LIPE-AS1 ZNF574 LOC101930071 ZNF526 RABAC1 PAFAH1B3 ERF LOC390937 GSK3A LOC100505585 CNFN PRR19 ARHGEF1 MIR8077 DEDD2 CIC RPS19 LOC100505622 MIR6797 TMEM145 LIPE MEGF8 CD79A
nsv579625	Chr.19:41896804 - 41902357 on Build GRCh38	Loss	ARHGEF1
nsv953580	Chr.19:41888230 - 41997948 on Build GRCh38	Deletion	LOC100505585 ATP1A3 RABAC1 ARHGEF1 LOC390937
nsv522854	Chr.19:41613927 - 42426852 on Build GRCh38	Gain	GRIK5 ATP1A3 POU2F2 MIR4323 LIPE-AS1 ZNF574 LOC101930071 ZNF526 CEACAM5 RABAC1 PAFAH1B3 ERF LOC390937 GSK3A LOC100505585 CNFN PRR19 CEACAM7 CEACAM4 CEACAM6 DMRTC2 ARHGEF1 MIR8077 CEACAM3 DEDD2 CIC RPS19 LOC100505622 MIR6797 TMEM145 LIPE MEGF8 CD79A LYPD4