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See other LOC105371049 CNV Assays ›
Gene Symbol
LOC105371049
Assay Reference Genome
Location

Chr.16:2093561 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02026946_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 105371049

Gene Name:

 uncharacterized LOC105371049

Gene Aliases:

 -

Location:

 Chr.16:2091436-2095017 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LOC105371049 NR_135175.1
BM824397.1

Target Gene Details

Entrez Gene ID:

 5310

Gene Name:

 polycystin 1, transient receptor potential channel interacting

Gene Aliases:

 PBP, Pc-1, TRPP1

Location:

 Chr.16:2088708-2135898 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 42 - Exon 42
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PKD1 NM_000296.3 NP_000287.3
NM_001009944.2 NP_001009944.2
XM_005255370.3 XP_005255427.1
XM_011522528.2 XP_011520830.1
XM_011522529.2 XP_011520831.1
XM_011522530.2 XP_011520832.1
XM_011522532.2 XP_011520834.1
XM_011522534.2 XP_011520836.1
XM_011522535.2 XP_011520837.1
XM_011522537.2 XP_011520839.1
XM_017023285.1 XP_016878774.1
AB209025.1 BAD92262.1
AB209675.1 BAD92912.1
L33243.1 AAC37576.1
U24497.1 AAC50128.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4862n54 Chr.16:2088868 - 2095128 on Build GRCh38 Loss LOC105371049 MIR1225 PKD1
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MRPL28 CASKIN1 LINC00254 LUC7L CEMP1 BAIAP3 PRR25 MEIOB TRAF7 BRICD5 TPSB2 TBL3 RAB26 WASIR2 LMF1 MIR6767 HS3ST6 MIR4717 TSR3 MIR662 SYNGR3 METRN NARFL PKD1 NHLRC4 TMEM8A SNORA10 FBXL16 LOC107987233 MSLN CCDC154 LOC105371184 LOC105371049 DNASE1L2 RPL23AP5 IFT140 LOC729652 MIR3677 DECR2 SNHG9 LOC100134368 CCNF TBC1D24 RPS2 METTL26 PRSS29P MIR3180-5 LOC105371046 LOC105371047 TELO2 SNORA78 MIR3178 STUB1 HN1L RNF151 HAGH LOC101929280 TPSG1 GNG13 RHBDL1 RPL3L SSTR5 PDIA2 RPUSD1 CAPN15 SNORD60 LOC106660606 UNKL IGFALS EME2 HBA1 LINC00235 WFIKKN1 JMJD8 NUBP2 TPSAB1 FAHD1 CACNA1H PRSS27 LOC652276 MIR6859-4 RAB11FIP3 CLCN7 NPRL3 HBM RGS11 LOC107984876 TPSD1 ARHGDIG SPSB3 MIR1225 NOXO1 SOX8 POLR3K LOC105371038 MIR3177 C16orf91 MIR4516 NME3 SNHG19 MIR940 ECI1 NDUFB10 LMF1-AS1 LOC100287175 SLC9A3R2 GNPTG NTN3 AXIN1 MIR6511B1 SNORA64 PGP FAM173A SSTR5-AS1 MRPS34 C16orf59 FAM234A HBA2 CHTF18 PIGQ ERVK13-1 AMDHD2 MAPK8IP3 FLJ42627 CCDC78 GFER SNRNP25 PDPK1 MSRB1 RNPS1 MIR5587 KCTD5 NPW NTHL1 RHBDF1 C1QTNF8 ABCA3 MPG TMEM204 HBZ MLST8 DDX11L10 UBE2I E4F1 RHOT2 WDR24 ABCA17P ZNF598 MIR3176 CRAMP1 HAGHL MIR6768 TSC2 ATP6V0C WDR90 MCRIP2 PRR35 NME4 RAB40C LOC105371045 PTX4 HBQ1
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss CASKIN1 MIR3180-5 TRAF7 MIR1225 RNPS1 BRICD5 NOXO1 TBL3 RAB26 NPW NTHL1 MLST8 SYNGR3 MIR4516 SNHG19 SNORD60 E4F1 ECI1 PKD1 SLC9A3R2 ZNF598 LOC105371049 MIR6511B1 DNASE1L2 PGP TSC2 GFER
nsv952901 Chr.16:1888800 - 2135899 on Build GRCh38 Deletion MSRB1 ZNF598 LOC105371049 MIR6511B1 SNORA64 MIR1225 NOXO1 SNORA78 TBL3 NPW NTHL1 RNF151 HS3ST6 TSC2 SNHG9 SYNGR3 MIR4516 RPL3L NDUFB10 PKD1 GFER RPS2 SNORA10 SLC9A3R2
nsv1160329 Chr.16:1961727 - 2128574 on Build GRCh38 Deletion ZNF598 LOC105371049 MIR6511B1 SNORA64 MIR1225 NOXO1 SNORA78 TBL3 NPW NTHL1 RNF151 TSC2 SNHG9 SYNGR3 NDUFB10 PKD1 GFER RPS2 SNORA10 SLC9A3R2
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss CASKIN1 MIR3180-5 LOC105371049 MIR6511B1 TRAF7 MIR1225 DNASE1L2 BRICD5 PGP RAB26 MLST8 TSC2 MIR4516 SNHG19 SNORD60 E4F1 ECI1 PKD1
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss CASKIN1 MIR3180-5 MIR4516 LOC105371049 SNHG19 MIR6511B1 TRAF7 MIR1225 SNORD60 PKD1 RAB26 TSC2
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain PDPK1 CASKIN1 CEMP1 MIR3180-5 TRAF7 MIR1225 RNPS1 BRICD5 MIR3178 RAB26 ABCA3 MIR6767 MLST8 MIR4717 MIR4516 SNHG19 SNORD60 E4F1 MIR940 ECI1 PKD1 LOC106660606 ABCA17P NTN3 LOC105371049 MIR6511B1 DNASE1L2 PGP C16orf59 LOC729652 MIR3677 MIR6768 TSC2 LOC652276 ATP6V0C CCNF AMDHD2 TBC1D24
nsv471381 Chr.16:2088710 - 2135898 on Build GRCh38 Gain MIR4516 LOC105371049 MIR6511B1 MIR1225 PKD1 TSC2
esv26918 Chr.16:2091142 - 2123135 on Build GRCh38 Gain+Loss LOC105371049 MIR6511B1 PKD1

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

ion channel

Gene Ontology Categories:

Function(s) Process(es)


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