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See other LOC105371049 CNV Assays ›
Gene Symbol
LOC105371049
Assay Reference Genome
Location

Chr.16:2093561 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02026946_cn
Size
Availability Made To Order
Catalog # 4400291
Price 4,505.00
Your Price
Online offer:
4505.0
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Assay Details

Target Gene Details

Entrez Gene ID:

 105371049

Gene Name:

 uncharacterized LOC105371049

Gene Aliases:

 -

Location:

 Chr.16:2091436-2095017 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LOC105371049 NR_135175.1
BM824397.1

Target Gene Details

Entrez Gene ID:

 5310

Gene Name:

 polycystin 1, transient receptor potential channel interacting

Gene Aliases:

 PBP, Pc-1, TRPP1

Location:

 Chr.16:2088708-2135898 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 42 - Exon 42
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PKD1 NM_000296.3 NP_000287.3
NM_001009944.2 NP_001009944.2
XM_005255370.3 XP_005255427.1
XM_011522528.2 XP_011520830.1
XM_011522529.2 XP_011520831.1
XM_011522530.2 XP_011520832.1
XM_011522532.2 XP_011520834.1
XM_011522534.2 XP_011520836.1
XM_011522535.2 XP_011520837.1
XM_011522537.2 XP_011520839.1
XM_017023285.1 XP_016878774.1
AB209025.1 BAD92262.1
AB209675.1 BAD92912.1
L33243.1 AAC37576.1
U24497.1 AAC50128.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4862n54 Chr.16:2088868 - 2095128 on Build GRCh38 Loss MIR1225 LOC105371049 PKD1
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication PTX4 FAM234A TPSG1 MIR3176 RPUSD1 JMJD8 LOC107984876 HBZ RAB40C HBA1 CCDC78 HAGHL MIR3177 SSTR5-AS1 FLJ42627 LOC729652 MRPS34 GNG13 CASKIN1 MIR662 SNORA64 HAGH MSRB1 MIR3180-5 SNHG9 NUBP2 DDX11L10 RAB26 RPS2 LUC7L CLCN7 LOC652276 TSC2 LOC101929280 DECR2 MIR5587 ZNF598 SNRNP25 C1QTNF8 MAPK8IP3 LOC105371045 METRN RHOT2 MPG HS3ST6 IFT140 CEMP1 TPSAB1 TMEM8A WDR24 AXIN1 NTN3 FBXL16 MRPL28 TRAF7 LOC105371038 CCDC154 LINC00254 PRR25 DNASE1L2 MIR6859-4 NARFL GNPTG RAB11FIP3 NDUFB10 SNHG19 EME2 HN1L PRSS29P TMEM204 SLC9A3R2 MIR6511B1 LINC00235 ARHGDIG TPSB2 POLR3K CRAMP1 KCTD5 TPSD1 IGFALS LOC100287175 TBL3 RHBDL1 AMDHD2 RPL3L ABCA17P LOC105371047 C16orf59 HBQ1 PDPK1 NME4 SYNGR3 ABCA3 TBC1D24 ERVK13-1 RNPS1 RGS11 RNF151 MIR1225 LMF1-AS1 MEIOB TELO2 E4F1 BAIAP3 NME3 MIR6767 MLST8 UBE2I WASIR2 SNORD60 CACNA1H CAPN15 MIR4717 RPL23AP5 BRICD5 CHTF18 RHBDF1 TSR3 SSTR5 MIR4516 NTHL1 FAM173A PDIA2 SPSB3 PIGQ WFIKKN1 MCRIP2 SNORA10 NHLRC4 SOX8 HBM NPW NPRL3 LOC107987233 ATP6V0C LMF1 CCNF WDR90 LOC105371184 UNKL LOC105371046 GFER LOC106660606 PRSS27 MIR940 FAHD1 METTL26 STUB1 LOC100134368 HBA2 MIR6768 NOXO1 LOC105371049 C16orf91 ECI1 MIR3677 PGP MIR3178 SNORA78 PKD1 PRR35 MSLN
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss ZNF598 MIR4717 BRICD5 TBL3 MIR4516 NTHL1 SYNGR3 ABCA3 NPW RNPS1 TRAF7 DNASE1L2 MIR1225 CASKIN1 GFER LOC106660606 MIR940 SNHG19 MIR3180-5 E4F1 RAB26 NOXO1 LOC105371049 MLST8 SLC9A3R2 ECI1 MIR6511B1 TSC2 MIR3677 PGP SNORD60 PKD1
nsv952901 Chr.16:1888800 - 2135899 on Build GRCh38 Deletion ZNF598 RNF151 MIR1225 TBL3 RPL3L GFER SNORA64 NDUFB10 MIR4516 NTHL1 HS3ST6 MSRB1 SNHG9 SYNGR3 RPS2 SNORA10 NOXO1 LOC105371049 SLC9A3R2 MIR6511B1 NPW TSC2 SNORA78 PKD1
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss TRAF7 BRICD5 DNASE1L2 MIR1225 CASKIN1 MIR4516 SNHG19 MIR3180-5 E4F1 RAB26 LOC105371049 MLST8 ECI1 MIR6511B1 TSC2 PGP SNORD60 PKD1
nsv1160329 Chr.16:1961727 - 2128574 on Build GRCh38 Deletion ZNF598 RNF151 MIR1225 TBL3 GFER SNORA64 NDUFB10 NTHL1 SNHG9 SYNGR3 RPS2 SNORA10 NOXO1 LOC105371049 SLC9A3R2 MIR6511B1 NPW TSC2 SNORA78 PKD1
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss MIR3180-5 TRAF7 RAB26 MIR1225 LOC105371049 CASKIN1 MIR6511B1 TSC2 MIR4516 SNHG19 SNORD60 PKD1
nsv482186 Chr.16:2088710 - 2135898 on Build GRCh38 Gain MIR1225 LOC105371049 MIR6511B1 TSC2 MIR4516 PKD1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR4717 BRICD5 AMDHD2 ABCA17P MIR4516 CEMP1 C16orf59 PDPK1 ABCA3 TBC1D24 NTN3 ATP6V0C LOC729652 RNPS1 CCNF TRAF7 DNASE1L2 MIR1225 CASKIN1 LOC106660606 MIR940 SNHG19 MIR3180-5 E4F1 RAB26 MIR6767 MIR6768 LOC105371049 LOC652276 MLST8 ECI1 MIR6511B1 TSC2 MIR3677 PGP MIR3178 SNORD60 PKD1
esv26918 Chr.16:2091142 - 2123135 on Build GRCh38 Gain+Loss LOC105371049 MIR6511B1 PKD1

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

ion channel

Gene Ontology Categories:

Function(s) Process(es)


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