Hs02056191_cn

• Gene Symbol: TRPT1
• Assay Reference Genome Location: Chr.11:64225552 on build GRCh38
• Cytoband: 11q13.1

Target Gene Details

• Entrez Gene ID: 83707
• Gene Name: tRNA phosphotransferase 1
• Gene Aliases: -
• Location: Chr.11:64223799-64226254 on Build GRCh38
• Assay Gene Location: Overlaps Intron 2 - Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TRPT1	NM_001033678.3			NP_001028850.2
	NM_001160389.1			NP_001153861.1
	NM_001160390.1			NP_001153862.1
	NM_001160392.1			NP_001153864.1
	NM_001160393.1			NP_001153865.1
	NM_031472.3			NP_113660.1
	XM_005274345.4			XP_005274402.1
	XM_005274346.4			XP_005274403.1
	XM_005274347.4			XP_005274404.1
	XM_006718706.3			XP_006718769.1
	XM_006718707.3			XP_006718770.1
	XM_017018400.1			XP_016873889.1
	XM_017018401.1			XP_016873890.1
	AK026364.1
	AW771318.1
	AY211494.1			AAO62941.1
	BC005133.2			AAH05133.1
	BG105545.1
	BM982538.1
	BQ672032.1
	BQ674339.1
	DA822624.1
	DR004975.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1159904	Chr.11:64150129 - 64279169 on Build GRCh38	Deletion	PLCB3 NUDT22 FKBP2 STIP1 FERMT3 BAD DNAJC4 VEGFB GPR137 LOC105369340 TRPT1 MACROD1 PPP1R14B
esv992196	Chr.11:64225062 - 64234883 on Build GRCh38	Deletion	VEGFB NUDT22 TRPT1 DNAJC4
nsv951010	Chr.11:63942829 - 64352128 on Build GRCh38	Deletion	PRDX5 NUDT22 NAA40 KCNK4 MIR7155 GPR137 FLRT1 TRPT1 ESRRA TRMT112 PLCB3 FKBP2 STIP1 OTUB1 FERMT3 BAD DNAJC4 VEGFB KCNK4-TEX40 LOC105369340 COX8A TEX40 MACROD1 CCDC88B PPP1R14B
dgv1963n54	Chr.11:64174262 - 64329761 on Build GRCh38	Loss	PRDX5 PLCB3 NUDT22 FKBP2 STIP1 FERMT3 BAD DNAJC4 KCNK4 VEGFB KCNK4-TEX40 GPR137 LOC105369340 TEX40 TRPT1 ESRRA PPP1R14B TRMT112
nsv555187	Chr.11:64185649 - 64260416 on Build GRCh38	Loss	VEGFB PLCB3 NUDT22 FKBP2 STIP1 LOC105369340 FERMT3 TRPT1 DNAJC4 PPP1R14B
nsv555184	Chr.11:64156974 - 64275525 on Build GRCh38	Loss	PLCB3 NUDT22 FKBP2 STIP1 FERMT3 BAD DNAJC4 VEGFB GPR137 LOC105369340 TRPT1 MACROD1 PPP1R14B
nsv832186	Chr.11:64204788 - 64402587 on Build GRCh38	Loss	PRDX5 PLCB3 NUDT22 FKBP2 FERMT3 BAD DNAJC4 KCNK4 VEGFB MIR7155 KCNK4-TEX40 GPR137 LOC105369340 TEX40 TRPT1 ESRRA RPS6KA4 CCDC88B MIR1237 PPP1R14B TRMT112
nsv469961	Chr.11:64055468 - 64318495 on Build GRCh38	Loss	PRDX5 PLCB3 NUDT22 FKBP2 STIP1 FERMT3 BAD DNAJC4 KCNK4 VEGFB KCNK4-TEX40 GPR137 LOC105369340 TEX40 FLRT1 TRPT1 ESRRA MACROD1 PPP1R14B TRMT112

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

transferase

Gene Ontology Categories:

Process(es)

tRNA splicing, via endonucleolytic cleavage and ligation
regulation of protein kinase activity

Function(s)

tRNA 2'-phosphotransferase activity