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See other HLA-DMB CNV Assays ›
Gene Symbol
HLA-DMB
Assay Reference Genome
Location

Chr.6:32938721 on build GRCh38
Cytoband
6p21.32
Assay ID Hs02096962_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 3109

Gene Name:

 major histocompatibility complex, class II, DM beta

Gene Aliases:

 D6S221E, RING7

Location:

 Chr.6:32934629-32941070 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 2 - Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-DMB NM_002118.4 NP_002109.2
AB209577.1 2 477 BAD92814.1
AK295872.1
AK301017.1
AK315979.1
AY645722.1 AAV97947.1
BC027175.1 AAH27175.1
CR407606.1 CAG28534.1
DC389968.1
EL948395.1
U15085.1 AAB60387.1
Z23139.1 CAA80670.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2759417 Chr.6:32898012 - 32996319 on Build GRCh38 Gain HLA-DMB LOC100294145 BRD2 HLA-DMA
nsv483081 Chr.6:32882976 - 33031504 on Build GRCh38 Loss HLA-DMB LOC100294145 BRD2 HLA-DOA HLA-DMA
nsv1161376 Chr.6:32913750 - 32953997 on Build GRCh38 Duplication HLA-DMB HLA-DMA
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion PFDN6 LY6G6D CLIC1 HLA-DQA2 SKIV2L ATP6V1G2 SNORD52 VARS AIF1 TNXB ZBTB22 LOC100287329 ATF6B MIR4646 KIFC1 C4B PSMB8-AS1 AGER SNORA38 MIR6721 PHF1 HLA-DRB5 NEU1 HSPA1B HSD17B8 LY6G6E EHMT2 C6orf10 RPS18 MIR5004 C2 ABHD16A GPANK1 HLA-DMA GPSM3 NCR3 LST1 MSH5 DAXX CFB C2-AS1 HCG25 MCCD1 PSMB8 LOC100507547 LOC100294145 C6orf25 MIR219A1 LY6G6C SLC44A4 HLA-DQB1-AS1 LTB CYP21A1P BRD2 COL11A2 MIR6833 HLA-DRB1 HLA-DOA HLA-DQB2 HLA-DOB ATP6V1G2-DDX39B LTA HLA-DPB2 SYNGAP1 B3GALT4 DXO LSM2 MSH5-SAPCD1 MIR3135B RGL2 HLA-DQA1 HLA-DMB SNORD117 VPS52 MICB EGFL8 HLA-DQB1 CYP21A2 ZBTB9 LOC102725068 RING1 MIR6832 C4A SAPCD1 C6orf47 LOC101929163 MIR1236 LY6G6F SAPCD1-AS1 MIR6834 RNF5 PPP1R2P1 NELFE HLA-DRA STK19 HSPA1A HLA-DPA1 TAP2 HCG26 FKBPL PBX2 ZBTB12 TNXA BTNL2 SLC39A7 PRRT1 NFKBIL1 APOM C6orf48 CSNK2B CUTA LY6G5B SNORD48 NOTCH4 HCP5 DDX39B-AS1 RXRB DDX39B HSPA1L PPT2-EGFL8 BAG6 TAPBP DDAH2 WDR46 HLA-DRB6 TAP1 PPT2 AGPAT1 PRRC2A TNF HCG23 MIR6873 HCG24 PSMB9 SNORD84 VWA7 HLA-DPB1 LY6G5C
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion PFDN6 LY6G6D CLIC1 HLA-DQA2 SKIV2L ATP6V1G2 SNORD52 VARS AIF1 TNXB ZBTB22 LOC100287329 ATF6B MIR4646 KIFC1 C4B PSMB8-AS1 AGER SNORA38 MIR6721 PHF1 HLA-DRB5 NEU1 HSPA1B HSD17B8 LY6G6E EHMT2 C6orf10 RPS18 MIR5004 C2 ABHD16A GPANK1 HLA-DMA GPSM3 NCR3 LST1 MSH5 DAXX CFB C2-AS1 HCG25 MCCD1 PSMB8 LOC100507547 LOC100294145 C6orf25 MIR219A1 LY6G6C SLC44A4 HLA-DQB1-AS1 LTB CYP21A1P BRD2 COL11A2 MIR6833 HLA-DRB1 HLA-DOA HLA-DQB2 HLA-DOB ATP6V1G2-DDX39B LTA HLA-DPB2 SYNGAP1 B3GALT4 DXO LSM2 MSH5-SAPCD1 MIR3135B RGL2 HLA-DQA1 HLA-DMB SNORD117 VPS52 MICB EGFL8 HLA-DQB1 CYP21A2 ZBTB9 LOC102725068 RING1 MIR6832 C4A SAPCD1 C6orf47 LOC101929163 MIR1236 LY6G6F SAPCD1-AS1 MIR6834 RNF5 PPP1R2P1 NELFE HLA-DRA STK19 HSPA1A HLA-DPA1 TAP2 HCG26 FKBPL PBX2 ZBTB12 TNXA BTNL2 SLC39A7 PRRT1 NFKBIL1 APOM C6orf48 CSNK2B CUTA LY6G5B SNORD48 NOTCH4 HCP5 DDX39B-AS1 RXRB DDX39B HSPA1L PPT2-EGFL8 BAG6 TAPBP DDAH2 WDR46 HLA-DRB6 TAP1 PPT2 AGPAT1 PRRC2A TNF HCG23 MIR6873 HCG24 PSMB9 SNORD84 VWA7 HLA-DPB1 LY6G5C
nsv830633 Chr.6:32829085 - 32995634 on Build GRCh38 Loss PSMB8 PPP1R2P1 TAP1 HLA-DMB LOC100294145 PSMB9 BRD2 PSMB8-AS1 TAP2 HLA-DMA
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion PFDN6 RING1 DAXX HCG25 PSMB8 LOC100294145 MIR219A1 CUTA HLA-DQA2 HLA-DQB1-AS1 MIR6834 PPP1R2P1 RXRB BRD2 ZBTB22 COL11A2 KIFC1 PSMB8-AS1 TAPBP HLA-DOA HLA-DQB2 HLA-DOB WDR46 TAP1 HLA-DPB2 HLA-DPA1 PHF1 SYNGAP1 B3GALT4 HSD17B8 TAP2 MIR3135B RGL2 MIR6873 HLA-DQA1 HLA-DMB VPS52 HCG24 HLA-DQB1 PSMB9 RPS18 MIR5004 ZBTB9 HLA-DPB1 SLC39A7 HLA-DMA

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