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See other HLA-DMB CNV Assays ›
Gene Symbol
HLA-DMB
Assay Reference Genome
Location

Chr.6:32938979 on build GRCh38
Cytoband
6p21.32
Assay ID Hs02193332_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 3109

Gene Name:

 major histocompatibility complex, class II, DM beta

Gene Aliases:

 D6S221E, RING7

Location:

 Chr.6:32934629-32941070 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 1 - Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-DMB NM_002118.4 NP_002109.2
AB209577.1 BAD92814.1
AK295872.1
AK301017.1
AK315979.1
AY645722.1 AAV97947.1
BC027175.1 AAH27175.1
CR407606.1 CAG28534.1
DC389968.1
U15085.1 AAB60387.1
Z23139.1 CAA80670.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2759417 Chr.6:32898012 - 32996319 on Build GRCh38 Gain LOC100294145 HLA-DMB BRD2 HLA-DMA
nsv483081 Chr.6:32882976 - 33031504 on Build GRCh38 Loss LOC100294145 HLA-DOA HLA-DMB BRD2 HLA-DMA
nsv1161376 Chr.6:32913750 - 32953997 on Build GRCh38 Duplication HLA-DMB HLA-DMA
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion C6orf48 HLA-DRB5 MIR4646 NEU1 RGL2 SNORA38 VARS PFDN6 HSD17B8 LOC102725068 TNXA HCG26 HLA-DRB1 C4A PSMB9 LOC100294145 EGFL8 NELFE SYNGAP1 SLC44A4 HLA-DPB2 LSM2 HLA-DRB6 HLA-DRA C6orf25 WDR46 HSPA1A BTNL2 LOC100287329 MSH5 APOM RXRB ATF6B TAPBP HLA-DOA PPT2-EGFL8 HLA-DQA2 MIR1236 HLA-DQB2 RNF5 PSMB8 PRRC2A HLA-DPA1 CLIC1 HCP5 BAG6 GPSM3 HLA-DOB CFB LY6G6E PRRT1 NOTCH4 LY6G6F HLA-DQA1 MIR3135B NFKBIL1 HSPA1B LOC101929163 PBX2 LY6G6C MIR6873 HCG23 SNORD117 ABHD16A PHF1 BRD2 MIR6832 CYP21A1P C4B SAPCD1-AS1 CYP21A2 SLC39A7 AGPAT1 ATP6V1G2 ZBTB22 SNORD52 RING1 STK19 MIR6834 EHMT2 DDAH2 LST1 LOC100507547 SNORD84 LY6G5C SNORD48 LY6G5B ZBTB12 PPP1R2P1 MIR219A1 TAP2 LTA AGER AIF1 LY6G6D GPANK1 HLA-DPB1 HLA-DMB HSPA1L SAPCD1 ATP6V1G2-DDX39B DAXX RPS18 PPT2 DDX39B-AS1 MCCD1 PSMB8-AS1 MIR5004 DXO MSH5-SAPCD1 COL11A2 C6orf47 TNF C2 FKBPL LTB C6orf10 B3GALT4 HLA-DQB1-AS1 ZBTB9 VPS52 CSNK2B VWA7 CUTA MIR6833 SKIV2L MICB HLA-DMA HCG25 MIR6721 HCG24 NCR3 TNXB HLA-DQB1 KIFC1 C2-AS1 DDX39B TAP1
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion C6orf48 HLA-DRB5 MIR4646 NEU1 RGL2 SNORA38 VARS PFDN6 HSD17B8 LOC102725068 TNXA HCG26 HLA-DRB1 C4A PSMB9 LOC100294145 EGFL8 NELFE SYNGAP1 SLC44A4 HLA-DPB2 LSM2 HLA-DRB6 HLA-DRA C6orf25 WDR46 HSPA1A BTNL2 LOC100287329 MSH5 APOM RXRB ATF6B TAPBP HLA-DOA PPT2-EGFL8 HLA-DQA2 MIR1236 HLA-DQB2 RNF5 PSMB8 PRRC2A HLA-DPA1 CLIC1 HCP5 BAG6 GPSM3 HLA-DOB CFB LY6G6E PRRT1 NOTCH4 LY6G6F HLA-DQA1 MIR3135B NFKBIL1 HSPA1B LOC101929163 PBX2 LY6G6C MIR6873 HCG23 SNORD117 ABHD16A PHF1 BRD2 MIR6832 CYP21A1P C4B SAPCD1-AS1 CYP21A2 SLC39A7 AGPAT1 ATP6V1G2 ZBTB22 SNORD52 RING1 STK19 MIR6834 EHMT2 DDAH2 LST1 LOC100507547 SNORD84 LY6G5C SNORD48 LY6G5B ZBTB12 PPP1R2P1 MIR219A1 TAP2 LTA AGER AIF1 LY6G6D GPANK1 HLA-DPB1 HLA-DMB HSPA1L SAPCD1 ATP6V1G2-DDX39B DAXX RPS18 PPT2 DDX39B-AS1 MCCD1 PSMB8-AS1 MIR5004 DXO MSH5-SAPCD1 COL11A2 C6orf47 TNF C2 FKBPL LTB C6orf10 B3GALT4 HLA-DQB1-AS1 ZBTB9 VPS52 CSNK2B VWA7 CUTA MIR6833 SKIV2L MICB HLA-DMA HCG25 MIR6721 HCG24 NCR3 TNXB HLA-DQB1 KIFC1 C2-AS1 DDX39B TAP1
nsv830633 Chr.6:32829085 - 32995634 on Build GRCh38 Loss TAP2 PSMB9 LOC100294145 HLA-DMB PSMB8 PSMB8-AS1 BRD2 HLA-DMA PPP1R2P1 TAP1
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion HLA-DOA MIR5004 HLA-DQA2 HLA-DQB2 ZBTB22 PSMB8 RING1 COL11A2 MIR6834 HLA-DPA1 RGL2 PFDN6 HSD17B8 HLA-DOB HLA-DQA1 MIR3135B B3GALT4 HLA-DQB1-AS1 PPP1R2P1 ZBTB9 VPS52 MIR219A1 TAP2 PSMB9 LOC100294145 HLA-DPB1 HLA-DMB MIR6873 CUTA SYNGAP1 PHF1 HLA-DPB2 BRD2 HLA-DMA HCG25 DAXX RPS18 WDR46 HCG24 SLC39A7 HLA-DQB1 KIFC1 PSMB8-AS1 RXRB TAPBP TAP1

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