Genomic Map
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Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SCAF1 | NM_021228.2 | 7 | 1048 | NP_067051.2 |
| XM_005259122.4 | 7 | 1331 | XP_005259179.1 | |
| XM_011527194.2 | 7 | 973 | XP_011525496.1 | |
| XM_017027083.1 | 4 | 775 | XP_016882572.1 | |
| AK024444.1 | 7 | 1048 | ||
| BC011662.2 | AAH11662.2 | |||
| BC053992.1 | 6 | 935 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss |
 PRMT1
RRAS
IRF3
CPT1C
NOSIP
PRRG2
MIR5088
PRR12
SCAF1
BCL2L12
ADM5
|
| nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss |
PRMT1
RRAS
IRF3
CPT1C
NOSIP
PRRG2
MIR5088
PRR12
SCAF1
BCL2L12
ADM5
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
TRPM4
LMTK3
SNRNP70
SNAR-C1
CARD8-AS1
FLT3LG
KDELR1
CABP5
SNAR-A2
SNAR-A14
CGB3
DKKL1
LOC101059948
RCN3
GRWD1
LIN7B
CA11
PTOV1
DHDH
SNAR-A1
SNAR-A5
LOC101928295
FCGRT
GYS1
SNORD35A
SNORD34
HSD17B14
FLJ26850
DBP
TBC1D17
MIR6798
IRF3
TMEM143
RPS11
CCDC114
AP2A1
BCAT2
CYTH2
MIR5088
SCAF1
SYNGR4
PTOV1-AS2
NTF4
C19orf73
TSKS
PIH1D1
PTOV1-AS1
SNAR-C3
NUCB1-AS1
GRIN2D
SNAR-B1
NUP62
BCL2L12
CD37
FUZ
CGB8
ZNF114
SNAR-A3
SNAR-A13
MIR6799
KCNJ14
RPL13A
RPL18
ALDH16A1
PRR12
SPHK2
MIR4324
ZNF473
VRK3
SULT2B1
SNAR-A4
SNAR-A6
MED25
SNAR-C5
PRMT1
SNAR-A10
CCDC155
KCNA7
FAM83E
NOSIP
NUCB1
CGB1
PLA2G4C
SIGLEC11
PRRG2
HRC
ELSPBP1
SIGLEC16
CARD8
RRAS
PLA2G4C-AS1
CGB5
SNORD33
IL4I1
MIR150
SPACA4
PLEKHA4
SEC1P
C19orf68
LIG1
FTL
LHB
PPFIA3
MIR4750
CGB2
MAMSTR
SNAR-A9
EMP3
SNAR-C4
ATF5
TEAD2
CPT1C
MIR4749
FGF21
NTN5
CGB7
SNORD32A
PTH2
SNAR-A11
SNORD35B
SNAR-A12
BSPH1
LOC105372430
BAX
TULP2
MIR4751
RASIP1
GFY
MIR6800
SNAR-B2
SNAR-C2
PPP1R15A
IZUMO1
SNAR-G1
SLC6A16
LOC100287477
ADM5
SNAR-G2
SLC17A7
SNAR-D
SNAR-A8
FUT2
FUT1
LOC105447645
RUVBL2
PNKP
AKT1S1
SNAR-A7
|
| nsv470150 | Chr.19:49618821 - 49856789 on Build GRCh38 | Gain |
PTOV1
FUZ
PRMT1
MIR6800
AP2A1
RRAS
MIR6799
CPT1C
MIR4749
MIR5088
PRR12
SCAF1
ADM5
PTOV1-AS2
TSKS
PTOV1-AS1
IRF3
MED25
BCL2L12
|
| nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain |
PRMT1
RRAS
IRF3
CPT1C
NOSIP
PRRG2
MIR5088
PRR12
SCAF1
BCL2L12
ADM5
|
| nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion |
PRMT1
AP2A1
ATF5
CPT1C
MIR4749
NOSIP
MIR5088
SCAF1
PTOV1-AS2
TSKS
PTOV1-AS1
PRRG2
NUP62
BCL2L12
MIR4751
PTOV1
FUZ
MIR6800
RRAS
MIR6799
IL4I1
PRR12
ADM5
MIR4750
TBC1D17
IRF3
PNKP
AKT1S1
MED25
|
| nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss |
IRF3
SCAF1
|
| nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion |
PRMT1
AP2A1
CPT1C
NOSIP
MIR5088
SCAF1
SNORD32A
TSKS
SNORD35B
PTOV1-AS1
RCN3
PRRG2
BCL2L12
FUZ
MIR6800
RRAS
MIR6799
SNORD33
RPL13A
PRR12
FCGRT
MIR150
ADM5
SNORD35A
SNORD34
IRF3
RPS11
MED25
|
| nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss |
PRMT1
RRAS
IRF3
NOSIP
PRRG2
PRR12
SCAF1
BCL2L12
|
| nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss |
IRF3
SCAF1
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Molecular Function -
RNA metabolism protein
RNA processing factor
RNA splicing factor
nucleic acid metabolism protein
Gene Ontology Categories:
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