Hs02202516_cn

• Gene Symbol: SSNA1
• Assay Reference Genome Location: Chr.9:137189226 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 8636
• Gene Name: SS nuclear autoantigen 1
• Gene Aliases: N14, NA-14, NA14
• Location: Chr.9:137188602-137190370 on Build GRCh38
• Assay Gene Location: Overlaps Exon 2 - Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SSNA1	NM_003731.2			NP_003722.2
	BC000864.1			AAH00864.1
	BT006766.1			AAP35412.1
	CR542238.1			CAG47034.1
	DB466912.1
	Z96932.1			CAB09660.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv616007	Chr.9:137079368 - 137240666 on Build GRCh38	Loss	RNF208 SLC34A3 CYSRT1 DPP7 TPRN LRRC26 MIR3621 TMEM203 RNF224 NDOR1 MAN1B1-AS1 UAP1L1 SSNA1 GRIN1 TMEM210 ANAPC2 MAN1B1 LOC101930307
dgv13009n54	Chr.9:137173890 - 137327859 on Build GRCh38	Loss	RNF208 SLC34A3 EXD3 CYSRT1 TUBB4B TPRN NELFB TOR4A TMEM203 RNF224 STPG3 NDOR1 C9orf173-AS1 SSNA1 ANAPC2 NRARP FAM166A
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	PHPT1 CCDC183-AS1 MIR3621 MIR4292 TOR4A TRAF2 NOXA1 CLIC3 UAP1L1 MIR4479 PTGDS MAMDC4 CYSRT1 LCN12 TPRN LRRC26 EDF1 TMEM203 SSNA1 ANAPC2 MAN1B1 FAM166A PRR31 NSMF TUBB4B NELFB RABL6 C8G CCDC183 STPG3 NDOR1 GRIN1 TMEM210 NRARP LCNL1 MIR7114 NPDC1 RNF208 SLC34A3 FUT7 C9orf142 EXD3 ENTPD2 DPP7 FBXW5 SAPCD2 RNF224 C9orf139 ABCA2 MAN1B1-AS1 C9orf173-AS1 C9orf172 PNPLA7 LOC101930307 ENTPD8
nsv951207	Chr.9:137136949 - 137379148 on Build GRCh38	Deletion	RNF208 SLC34A3 EXD3 CYSRT1 TUBB4B TPRN LRRC26 NELFB MIR3621 TOR4A TMEM203 RNF224 STPG3 NDOR1 C9orf173-AS1 SSNA1 GRIN1 TMEM210 ANAPC2 NRARP FAM166A
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	NPDC1 FUT7 ENTPD2 DPP7 LRRC26 MIR3621 SAPCD2 C9orf139 MAN1B1-AS1 UAP1L1 SSNA1 GRIN1 TMEM210 ANAPC2 MAN1B1 LOC101930307
nsv1161918	Chr.9:137118319 - 137438026 on Build GRCh38	Duplication	RNF208 SLC34A3 EXD3 CYSRT1 TUBB4B TPRN LRRC26 NELFB MIR3621 TOR4A TMEM203 RNF224 NOXA1 STPG3 NDOR1 C9orf173-AS1 SSNA1 GRIN1 TMEM210 ANAPC2 NRARP ENTPD8 FAM166A
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	LCN8 PHPT1 CCDC183-AS1 MIR3621 MIR4292 TOR4A TRAF2 CLIC3 UAP1L1 LINC01451 MIR4479 PTGDS MIR126 MAMDC4 CYSRT1 LCN12 TPRN LRRC26 TMEM141 EDF1 TMEM203 SNORA17B HSPC324 SSNA1 FAM69B ANAPC2 MAN1B1 FAM166A PRR31 TUBB4B NELFB LCN15 RABL6 C8G CCDC183 AGPAT2 STPG3 SNORA17A NDOR1 GRIN1 TMEM210 MIR6722 SNHG7 NRARP LCNL1 LCN6 NPDC1 RNF208 SLC34A3 FUT7 C9orf142 LCN10 EXD3 ENTPD2 DPP7 EGFL7 FBXW5 SAPCD2 RNF224 C9orf139 ABCA2 LOC100128593 MAN1B1-AS1 C9orf173-AS1 C9orf172 LOC101930307

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

G2/M transition of mitotic cell cycle
intraciliary transport
ciliary receptor clustering involved in smoothened signaling pathway

Function(s)

protein binding
identical protein binding