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See other HLA-DMB CNV Assays ›
Gene Symbol
HLA-DMB
Assay Reference Genome
Location

Chr.6:32934880 on build GRCh38
Cytoband
6p21.32
Assay ID Hs02274638_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 3109

Gene Name:

 major histocompatibility complex, class II, DM beta

Gene Aliases:

 D6S221E, RING7

Location:

 Chr.6:32934629-32941070 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-DMB NM_002118.4 6 1146 NP_002109.2
AB209577.1 2 4318 BAD92814.1
AY645722.1 6 1116 AAV97947.1
BC027175.1 6 1027 AAH27175.1
CD742571.1 1 267
EL948395.1
U15085.1 6 1116 AAB60387.1
Z23139.1 6 1051 CAA80670.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2759417 Chr.6:32898012 - 32996319 on Build GRCh38 Gain BRD2 HLA-DMB HLA-DMA LOC100294145
nsv483081 Chr.6:32882976 - 33031504 on Build GRCh38 Loss BRD2 HLA-DMB HLA-DMA HLA-DOA LOC100294145
nsv1161376 Chr.6:32913750 - 32953997 on Build GRCh38 Duplication HLA-DMB HLA-DMA
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion ATF6B CSNK2B HLA-DRB5 HCG25 PRRT1 NEU1 PSMB9 RXRB CYP21A1P LOC101929163 PRRC2A MICB VPS52 PPT2-EGFL8 DDX39B C6orf47 SLC39A7 HLA-DQA1 CYP21A2 C2 MIR6721 MSH5-SAPCD1 SYNGAP1 HLA-DOA CFB STK19 CUTA SLC44A4 SNORD52 VARS PSMB8-AS1 NCR3 HLA-DQB2 AGER PPT2 SKIV2L MIR4646 LSM2 MIR219A1 ATP6V1G2 LY6G6F TAPBP COL11A2 PBX2 HCP5 LOC100507547 C4B AIF1 LOC100294145 HLA-DPB2 C4A HLA-DQB1-AS1 HLA-DPA1 FKBPL HLA-DQB1 BAG6 LTA SNORD84 DXO EGFL8 ABHD16A PHF1 HCG23 ZBTB9 ZBTB22 HLA-DQA2 LTB C6orf48 PPP1R2P1 MCCD1 HCG26 MIR1236 RGL2 GPSM3 TAP1 KIFC1 RNF5 RPS18 MIR6832 LY6G5C B3GALT4 HLA-DRA SAPCD1 TNXB MIR6834 SNORD48 C2-AS1 RING1 DAXX DDX39B-AS1 C6orf25 HLA-DMB LY6G5B BTNL2 MIR6873 WDR46 NELFE AGPAT1 LOC100287329 LST1 TNF APOM HLA-DMA HLA-DRB6 HLA-DPB1 PFDN6 DDAH2 CLIC1 SNORA38 SNORD117 HCG24 VWA7 ZBTB12 HSD17B8 TNXA MIR5004 HSPA1B ATP6V1G2-DDX39B NOTCH4 MIR6833 LY6G6E EHMT2 NFKBIL1 MSH5 TAP2 GPANK1 LOC102725068 LY6G6C HSPA1A LY6G6D HLA-DOB C6orf10 BRD2 PSMB8 SAPCD1-AS1 HSPA1L HLA-DRB1 MIR3135B
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion ATF6B CSNK2B HLA-DRB5 HCG25 PRRT1 NEU1 PSMB9 RXRB CYP21A1P LOC101929163 PRRC2A MICB VPS52 PPT2-EGFL8 DDX39B C6orf47 SLC39A7 HLA-DQA1 CYP21A2 C2 MIR6721 MSH5-SAPCD1 SYNGAP1 HLA-DOA CFB STK19 CUTA SLC44A4 SNORD52 VARS PSMB8-AS1 NCR3 HLA-DQB2 AGER PPT2 SKIV2L MIR4646 LSM2 MIR219A1 ATP6V1G2 LY6G6F TAPBP COL11A2 PBX2 HCP5 LOC100507547 C4B AIF1 LOC100294145 HLA-DPB2 C4A HLA-DQB1-AS1 HLA-DPA1 FKBPL HLA-DQB1 BAG6 LTA SNORD84 DXO EGFL8 ABHD16A PHF1 HCG23 ZBTB9 ZBTB22 HLA-DQA2 LTB C6orf48 PPP1R2P1 MCCD1 HCG26 MIR1236 RGL2 GPSM3 TAP1 KIFC1 RNF5 RPS18 MIR6832 LY6G5C B3GALT4 HLA-DRA SAPCD1 TNXB MIR6834 SNORD48 C2-AS1 RING1 DAXX DDX39B-AS1 C6orf25 HLA-DMB LY6G5B BTNL2 MIR6873 WDR46 NELFE AGPAT1 LOC100287329 LST1 TNF APOM HLA-DMA HLA-DRB6 HLA-DPB1 PFDN6 DDAH2 CLIC1 SNORA38 SNORD117 HCG24 VWA7 ZBTB12 HSD17B8 TNXA MIR5004 HSPA1B ATP6V1G2-DDX39B NOTCH4 MIR6833 LY6G6E EHMT2 NFKBIL1 MSH5 TAP2 GPANK1 LOC102725068 LY6G6C HSPA1A LY6G6D HLA-DOB C6orf10 BRD2 PSMB8 SAPCD1-AS1 HSPA1L HLA-DRB1 MIR3135B
nsv830633 Chr.6:32829085 - 32995634 on Build GRCh38 Loss PSMB8-AS1 PPP1R2P1 BRD2 TAP2 PSMB8 HLA-DMB HLA-DMA PSMB9 TAP1 LOC100294145
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion CUTA PHF1 HLA-DMA HLA-DPB1 ZBTB9 PFDN6 ZBTB22 HLA-DQA2 PSMB8-AS1 PPP1R2P1 HCG24 HCG25 HSD17B8 HLA-DQB2 MIR5004 RGL2 MIR219A1 PSMB9 TAP1 RXRB KIFC1 TAPBP RPS18 B3GALT4 COL11A2 TAP2 MIR6834 HLA-DOB VPS52 LOC100294145 BRD2 RING1 PSMB8 SLC39A7 HLA-DQA1 HLA-DPB2 DAXX HLA-DQB1-AS1 HLA-DMB SYNGAP1 HLA-DPA1 HLA-DOA HLA-DQB1 MIR3135B MIR6873 WDR46

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