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See other HLA-DMB CNV Assays ›
Gene Symbol
HLA-DMB
Assay Reference Genome
Location

Chr.6:32934880 on build GRCh38
Cytoband
6p21.32
Assay ID Hs02274638_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 3109

Gene Name:

 major histocompatibility complex, class II, DM beta

Gene Aliases:

 D6S221E, RING7

Location:

 Chr.6:32934629-32941070 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-DMB NM_002118.4 6 1146 NP_002109.2
AB209577.1 2 4318 BAD92814.1
AY645722.1 6 1116 AAV97947.1
BC027175.1 6 1027 AAH27175.1
CD742571.1 1 267
EL948395.1
U15085.1 6 1116 AAB60387.1
Z23139.1 6 1051 CAA80670.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2759417 Chr.6:32898012 - 32996319 on Build GRCh38 Gain LOC100294145 BRD2 HLA-DMA HLA-DMB
nsv483081 Chr.6:32882976 - 33031504 on Build GRCh38 Loss LOC100294145 BRD2 HLA-DMA HLA-DOA HLA-DMB
nsv1161376 Chr.6:32913750 - 32953997 on Build GRCh38 Duplication HLA-DMA HLA-DMB
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion VPS52 CFB MIR6832 LY6G6C EGFL8 CYP21A1P PSMB8 APOM MICB BAG6 LY6G6F PSMB9 PFDN6 LY6G6D HLA-DQB2 ATP6V1G2-DDX39B TNXA HSPA1B HLA-DPB2 NELFE NFKBIL1 EHMT2 CSNK2B ABHD16A HLA-DMB C6orf10 HCP5 WDR46 DXO HLA-DRB6 MCCD1 LOC100294145 AIF1 SKIV2L PPT2 DDAH2 SNORD84 TAP1 BRD2 HLA-DMA HLA-DQA2 MIR6834 GPSM3 SNORD117 MIR5004 TAPBP B3GALT4 HCG23 PPT2-EGFL8 FKBPL C2-AS1 HLA-DPA1 LOC100507547 HCG24 PPP1R2P1 MSH5 RNF5 STK19 LY6G5C RPS18 SNORA38 AGPAT1 SNORD52 VARS HCG25 HLA-DPB1 MIR219A1 LOC101929163 SYNGAP1 MIR6721 LTB CUTA CLIC1 PBX2 RGL2 SLC44A4 CYP21A2 C6orf47 DDX39B-AS1 HLA-DRB5 TAP2 LSM2 HLA-DRA HSPA1A HSPA1L ZBTB9 DDX39B HLA-DOA RING1 PRRC2A TNXB VWA7 PSMB8-AS1 MIR4646 HLA-DQA1 HCG26 TNF ATP6V1G2 PRRT1 AGER MIR1236 ATF6B SLC39A7 KIFC1 MIR6833 MIR6873 RXRB LOC100287329 DAXX NCR3 COL11A2 LY6G6E HSD17B8 HLA-DQB1-AS1 LOC102725068 HLA-DRB1 LST1 PHF1 ZBTB12 ZBTB22 NEU1 SAPCD1-AS1 C2 MIR3135B HLA-DQB1 C6orf25 C4A LY6G5B MSH5-SAPCD1 C4B NOTCH4 HLA-DOB BTNL2 GPANK1 C6orf48 SNORD48 LTA SAPCD1
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion VPS52 CFB MIR6832 LY6G6C EGFL8 CYP21A1P PSMB8 APOM MICB BAG6 LY6G6F PSMB9 PFDN6 LY6G6D HLA-DQB2 ATP6V1G2-DDX39B TNXA HSPA1B HLA-DPB2 NELFE NFKBIL1 EHMT2 CSNK2B ABHD16A HLA-DMB C6orf10 HCP5 WDR46 DXO HLA-DRB6 MCCD1 LOC100294145 AIF1 SKIV2L PPT2 DDAH2 SNORD84 TAP1 BRD2 HLA-DMA HLA-DQA2 MIR6834 GPSM3 SNORD117 MIR5004 TAPBP B3GALT4 HCG23 PPT2-EGFL8 FKBPL C2-AS1 HLA-DPA1 LOC100507547 HCG24 PPP1R2P1 MSH5 RNF5 STK19 LY6G5C RPS18 SNORA38 AGPAT1 SNORD52 VARS HCG25 HLA-DPB1 MIR219A1 LOC101929163 SYNGAP1 MIR6721 LTB CUTA CLIC1 PBX2 RGL2 SLC44A4 CYP21A2 C6orf47 DDX39B-AS1 HLA-DRB5 TAP2 LSM2 HLA-DRA HSPA1A HSPA1L ZBTB9 DDX39B HLA-DOA RING1 PRRC2A TNXB VWA7 PSMB8-AS1 MIR4646 HLA-DQA1 HCG26 TNF ATP6V1G2 PRRT1 AGER MIR1236 ATF6B SLC39A7 KIFC1 MIR6833 MIR6873 RXRB LOC100287329 DAXX NCR3 COL11A2 LY6G6E HSD17B8 HLA-DQB1-AS1 LOC102725068 HLA-DRB1 LST1 PHF1 ZBTB12 ZBTB22 NEU1 SAPCD1-AS1 C2 MIR3135B HLA-DQB1 C6orf25 C4A LY6G5B MSH5-SAPCD1 C4B NOTCH4 HLA-DOB BTNL2 GPANK1 C6orf48 SNORD48 LTA SAPCD1
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion SLC39A7 KIFC1 RGL2 VPS52 MIR6873 RXRB TAP1 BRD2 HLA-DMA HLA-DQA2 TAP2 DAXX MIR6834 PSMB8 COL11A2 HSD17B8 HLA-DQB1-AS1 PSMB9 MIR5004 TAPBP B3GALT4 PHF1 ZBTB22 PFDN6 HLA-DPA1 ZBTB9 HLA-DQB2 HCG24 PPP1R2P1 MIR3135B HLA-DPB2 HLA-DOA HLA-DQB1 RING1 RPS18 HLA-DMB PSMB8-AS1 WDR46 HLA-DQA1 HCG25 HLA-DOB LOC100294145 HLA-DPB1 MIR219A1 SYNGAP1 CUTA
nsv830633 Chr.6:32829085 - 32995634 on Build GRCh38 Loss PSMB8 PPP1R2P1 PSMB8-AS1 TAP1 LOC100294145 PSMB9 BRD2 HLA-DMA TAP2 HLA-DMB

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