Hs02285530_cn

• Gene Symbol: TFPT
• Assay Reference Genome Location: Chr.19:54108065 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 29844
• Gene Name: TCF3 fusion partner
• Gene Aliases: FB1, INO80F, amida
• Location: Chr.19:54107013-54115675 on Build GRCh38
• Assay Gene Location: Within Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TFPT	NM_001321792.1	5	615	NP_001308721.1
	NM_013342.3	5	1009	NP_037474.1
	XM_005278261.1	4	485	XP_005278318.1
	AF052052.1	6	882	AAD45182.1
	BC004281.1	5	641	AAH04281.1
	BC007776.2	5	627	AAH07776.1
	BQ027375.1	2	215

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	OSCAR NDUFA3 TFPT TARM1 PRPF31 VSTM1
nsv1056177	Chr.19:54073048 - 54112306 on Build GRCh38	Gain	OSCAR NDUFA3 TFPT TARM1
nsv515623	Chr.19:54102901 - 54179150 on Build GRCh38	Loss	TMC4 NDUFA3 MBOAT7 TFPT LENG1 CNOT3 PRPF31
nsv953613	Chr.19:54097214 - 54198733 on Build GRCh38	Deletion	OSCAR TMC4 NDUFA3 MBOAT7 TFPT LENG1 TSEN34 CNOT3 PRPF31
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	MYADM MIR373 MIR520D ZNF331 VN1R2 MIR525 CACNG8 MIR520B ZNF813 LILRB5 MIR4752 CNOT3 MIR526A1 FAM90A27P MIR520F TSEN34 MIR518A1 MIR935 TARM1 MIR518D LILRB3 MIR498 MIR516B2 ZNF761 TMC4 MIR517B LOC284379 TPM3P9 MIR518C MIR518E LOC105372457 CACNG6 ZNF818P MIR518A2 VSTM1 CACNG7 MIR520H MIR520G MIR519E MIR371B NDUFA3 MIR527 MIR519A2 PRKCG ZNF665 LILRA6 MIR518B MIR1283-2 ZNF765 MIR517C PRPF31 OSCAR ZNF845 MIR526B NLRP12 MIR512-1 MIR519B MIR515-2 MIR521-1 MIR523 MBOAT7 MIR519D DPRX MIR519A1 MIR1283-1 MIR522 ZNF525 MIR520E MIR520C MIR526A2 LILRB2 MIR524 MIR515-1 MIR518F MIR521-2 MIR519C MIR517A MIR516A2 MIR372 BIRC8 VN1R4 MIR512-2 LILRA5 MIR516A1 TFPT MIR516B1 LENG1 ZNF677 RPS9 MIR371A MIR1323 MIR520A
nsv470157	Chr.19:54063999 - 54127773 on Build GRCh38	Loss	OSCAR NDUFA3 TFPT TARM1 PRPF31
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	OSCAR NDUFA3 TFPT CACNG8 MIR935 CACNG6 TARM1 PRPF31 VSTM1
esv3893246	Chr.19:54081109 - 54111207 on Build GRCh38	Gain	OSCAR NDUFA3 TFPT TARM1

More Information

Additional Information:

For this assay, SNP(s) [rs140973668] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

DNA repair
DNA recombination
transcription, DNA-templated
regulation of transcription, DNA-templated
male gonad development
positive regulation of apoptotic process
apoptotic signaling pathway

Function(s)

DNA binding
protein binding
protein heterodimerization activity