Hs02298496_cn

• Gene Symbol: SNRPD3
• Assay Reference Genome Location: Chr.22:24572274 on build GRCh38
• Cytoband: 22q11.23

Target Gene Details

• Entrez Gene ID: 6634
• Gene Name: small nuclear ribonucleoprotein D3 polypeptide
• Gene Aliases: SMD3, Sm-D3
• Location: Chr.22:24555650-24574964 on Build GRCh38
• Assay Gene Location: Within Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNRPD3	NM_001278656.1	4	1104	NP_001265585.1
	NM_004175.4	4	1118	NP_004166.1
	NR_103819.1	3	925
	AK296173.1
	BP202359.1
	CN286602.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv8039n54	Chr.22:23323169 - 24601506 on Build GRCh38	Gain	GSTT2 ZNF70 ADORA2A SLC2A11 CES5AP1 MMP11 DERL3 SNRPD3 DRICH1 DDTL PCAT14 DDT LOC107985555 LOC388882 GSTT2B LOC101929374 ZDHHC8P1 GUCD1 CHCHD10 LRRC75B MIF-AS1 GUSBP11 SPECC1L VPREB3 SUSD2 LOC107985559 SPECC1L-ADORA2A ADORA2A-AS1 POM121L9P CABIN1 SMARCB1 UPB1 GGT1 RGL4 GSTTP1 GGT5 MIF C22orf15 LOC100652871 IGLL1
esv2724068	Chr.22:24288741 - 24669870 on Build GRCh38	Deletion	ADORA2A-AS1 GUCD1 UPB1 LRRC75B ADORA2A BCRP3 POM121L10P GGT1 SPECC1L SNRPD3 SPECC1L-ADORA2A
nsv1057819	Chr.22:24290518 - 24624081 on Build GRCh38	Gain	ADORA2A-AS1 GUCD1 UPB1 LRRC75B ADORA2A GGT1 SPECC1L SNRPD3 SPECC1L-ADORA2A
esv2724041	Chr.22:23315914 - 24669376 on Build GRCh38	Deletion	GSTT2 ZNF70 ADORA2A SLC2A11 POM121L10P CES5AP1 MMP11 DERL3 BCR SNRPD3 DRICH1 DDTL PCAT14 DDT LOC107985555 LOC388882 BCRP3 GSTT2B LOC101929374 ZDHHC8P1 GUCD1 CHCHD10 LRRC75B MIF-AS1 GUSBP11 SPECC1L VPREB3 SUSD2 LOC107985559 SPECC1L-ADORA2A ADORA2A-AS1 POM121L9P CABIN1 SMARCB1 UPB1 GGT1 RGL4 GSTTP1 GGT5 MIF C22orf15 LOC100652871 IGLL1
nsv526567	Chr.22:23348138 - 24600663 on Build GRCh38	Gain	GSTT2 ZNF70 ADORA2A SLC2A11 CES5AP1 MMP11 DERL3 SNRPD3 DRICH1 DDTL PCAT14 DDT LOC107985555 LOC388882 GSTT2B LOC101929374 ZDHHC8P1 GUCD1 CHCHD10 LRRC75B MIF-AS1 GUSBP11 SPECC1L VPREB3 SUSD2 LOC107985559 SPECC1L-ADORA2A ADORA2A-AS1 POM121L9P CABIN1 SMARCB1 UPB1 GGT1 RGL4 GSTTP1 GGT5 MIF C22orf15 LOC100652871 IGLL1
nsv1055830	Chr.22:24005071 - 24643213 on Build GRCh38	Gain	GUCD1 LRRC75B ADORA2A SPECC1L SUSD2 SNRPD3 SPECC1L-ADORA2A ADORA2A-AS1 POM121L9P CABIN1 UPB1 BCRP3 GGT1 GSTTP1 GGT5
esv3893463	Chr.22:24009046 - 24601506 on Build GRCh38	Gain	GUCD1 LRRC75B ADORA2A SPECC1L SUSD2 SNRPD3 SPECC1L-ADORA2A ADORA2A-AS1 POM121L9P CABIN1 UPB1 GGT1 GGT5
dgv4528n100	Chr.22:23322244 - 24682765 on Build GRCh38	Gain	GSTT2 ZNF70 ADORA2A SLC2A11 POM121L10P CES5AP1 MMP11 DERL3 SNRPD3 DRICH1 DDTL PCAT14 DDT LOC107985555 LOC388882 BCRP3 GSTT2B LOC101929374 ZDHHC8P1 GUCD1 CHCHD10 LRRC75B MIF-AS1 GUSBP11 SPECC1L VPREB3 SUSD2 LOC107985559 SPECC1L-ADORA2A ADORA2A-AS1 POM121L9P CABIN1 SMARCB1 UPB1 GGT1 RGL4 GSTTP1 GGT5 MIF C22orf15 LOC100652871 IGLL1
nsv588744	Chr.22:24285587 - 24617379 on Build GRCh38	Gain	ADORA2A-AS1 GUCD1 UPB1 LRRC75B ADORA2A GGT1 SPECC1L SNRPD3 SPECC1L-ADORA2A
esv3575443	Chr.22:23348201 - 24670505 on Build GRCh38	Gain	GSTT2 ZNF70 ADORA2A SLC2A11 POM121L10P CES5AP1 MMP11 DERL3 SNRPD3 DRICH1 DDTL PCAT14 DDT LOC107985555 LOC388882 BCRP3 GSTT2B LOC101929374 ZDHHC8P1 GUCD1 CHCHD10 LRRC75B MIF-AS1 GUSBP11 SPECC1L VPREB3 SUSD2 LOC107985559 SPECC1L-ADORA2A ADORA2A-AS1 POM121L9P CABIN1 SMARCB1 UPB1 GGT1 RGL4 GSTTP1 GGT5 MIF C22orf15 LOC100652871 IGLL1
nsv9884	Chr.22:24415625 - 24662249 on Build GRCh38	Gain+Loss	ADORA2A-AS1 GUCD1 UPB1 LRRC75B ADORA2A BCRP3 POM121L10P GGT1 SPECC1L SNRPD3 SPECC1L-ADORA2A

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

RNA splicing factor

Gene Ontology Categories:

Process(es)

spliceosomal complex assembly
spliceosomal snRNP assembly
mRNA splicing, via spliceosome
termination of RNA polymerase II transcription
protein methylation
histone mRNA metabolic process
RNA splicing
nuclear import

Function(s)

protein binding
enzyme binding
U2 snRNA binding
poly(A) RNA binding
telomerase RNA binding
histone pre-mRNA DCP binding
U7 snRNA binding