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See other HLA-DMB CNV Assays ›
Gene Symbol
HLA-DMB
Assay Reference Genome
Location

Chr.6:32937452 on build GRCh38
Cytoband
6p21.32
Assay ID Hs02328346_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 3109

Gene Name:

 major histocompatibility complex, class II, DM beta

Gene Aliases:

 D6S221E, RING7

Location:

 Chr.6:32934629-32941070 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 2 - Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-DMB NM_002118.4 NP_002109.2
AB209577.1 2 1746 BAD92814.1
AK295872.1
AK301017.1
AK315979.1
AY645722.1 AAV97947.1
BC027175.1 AAH27175.1
CD742571.1
CR407606.1 CAG28534.1
EL948395.1
U15085.1 AAB60387.1
Z23139.1 CAA80670.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2759417 Chr.6:32898012 - 32996319 on Build GRCh38 Gain BRD2 HLA-DMA HLA-DMB LOC100294145
nsv483081 Chr.6:32882976 - 33031504 on Build GRCh38 Loss HLA-DOA BRD2 HLA-DMA HLA-DMB LOC100294145
nsv1161376 Chr.6:32913750 - 32953997 on Build GRCh38 Duplication HLA-DMA HLA-DMB
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion CSNK2B ATF6B C4B CFB SNORA38 B3GALT4 PRRT1 HSPA1A SNORD52 TAPBP LOC101929163 DAXX HSPA1B MIR4646 HLA-DQB2 HLA-DQB1 RXRB C2 PBX2 LY6G5C GPANK1 PSMB9 MIR6833 NOTCH4 BAG6 MIR5004 ABHD16A LY6G5B HCP5 MIR6832 LOC100287329 LY6G6C ZBTB12 DXO HCG24 ATP6V1G2 SNORD117 NELFE PPT2-EGFL8 EGFL8 LOC102725068 GPSM3 BTNL2 LTB MIR1236 LY6G6F PSMB8-AS1 PPP1R2P1 C6orf48 HCG26 LTA HLA-DRB6 HLA-DPB2 C6orf47 RING1 MICB HCG25 NCR3 MCCD1 MIR6721 STK19 TNXB PPT2 HLA-DPB1 SKIV2L HLA-DQA2 HLA-DQB1-AS1 CLIC1 HSD17B8 WDR46 PFDN6 HLA-DOA HLA-DRB1 MIR219A1 VARS PRRC2A DDAH2 NEU1 SAPCD1 CUTA MIR3135B PHF1 VPS52 EHMT2 MSH5-SAPCD1 HLA-DRB5 NFKBIL1 PSMB8 ATP6V1G2-DDX39B AIF1 BRD2 C4A SLC39A7 LY6G6D HLA-DOB CYP21A1P HSPA1L RGL2 C2-AS1 RNF5 ZBTB22 C6orf25 ZBTB9 AGER HLA-DPA1 TAP2 HLA-DMA HLA-DMB LST1 TAP1 CYP21A2 RPS18 HCG23 AGPAT1 LSM2 LOC100294145 KIFC1 HLA-DRA MIR6834 MIR6873 SNORD84 TNXA MSH5 COL11A2 TNF C6orf10 HLA-DQA1 APOM DDX39B-AS1 VWA7 LOC100507547 LY6G6E SAPCD1-AS1 SNORD48 SLC44A4 SYNGAP1 FKBPL DDX39B
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion CSNK2B ATF6B C4B CFB SNORA38 B3GALT4 PRRT1 HSPA1A SNORD52 TAPBP LOC101929163 DAXX HSPA1B MIR4646 HLA-DQB2 HLA-DQB1 RXRB C2 PBX2 LY6G5C GPANK1 PSMB9 MIR6833 NOTCH4 BAG6 MIR5004 ABHD16A LY6G5B HCP5 MIR6832 LOC100287329 LY6G6C ZBTB12 DXO HCG24 ATP6V1G2 SNORD117 NELFE PPT2-EGFL8 EGFL8 LOC102725068 GPSM3 BTNL2 LTB MIR1236 LY6G6F PSMB8-AS1 PPP1R2P1 C6orf48 HCG26 LTA HLA-DRB6 HLA-DPB2 C6orf47 RING1 MICB HCG25 NCR3 MCCD1 MIR6721 STK19 TNXB PPT2 HLA-DPB1 SKIV2L HLA-DQA2 HLA-DQB1-AS1 CLIC1 HSD17B8 WDR46 PFDN6 HLA-DOA HLA-DRB1 MIR219A1 VARS PRRC2A DDAH2 NEU1 SAPCD1 CUTA MIR3135B PHF1 VPS52 EHMT2 MSH5-SAPCD1 HLA-DRB5 NFKBIL1 PSMB8 ATP6V1G2-DDX39B AIF1 BRD2 C4A SLC39A7 LY6G6D HLA-DOB CYP21A1P HSPA1L RGL2 C2-AS1 RNF5 ZBTB22 C6orf25 ZBTB9 AGER HLA-DPA1 TAP2 HLA-DMA HLA-DMB LST1 TAP1 CYP21A2 RPS18 HCG23 AGPAT1 LSM2 LOC100294145 KIFC1 HLA-DRA MIR6834 MIR6873 SNORD84 TNXA MSH5 COL11A2 TNF C6orf10 HLA-DQA1 APOM DDX39B-AS1 VWA7 LOC100507547 LY6G6E SAPCD1-AS1 SNORD48 SLC44A4 SYNGAP1 FKBPL DDX39B
nsv830633 Chr.6:32829085 - 32995634 on Build GRCh38 Loss PPP1R2P1 TAP2 BRD2 HLA-DMA HLA-DMB LOC100294145 TAP1 PSMB8 PSMB8-AS1 PSMB9
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion PFDN6 HLA-DPA1 HLA-DOA HCG24 MIR219A1 TAP2 HLA-DMA B3GALT4 CUTA HLA-DMB TAPBP TAP1 MIR3135B PSMB8-AS1 DAXX PPP1R2P1 PHF1 VPS52 RPS18 HLA-DQB2 HLA-DQB1 RXRB HLA-DPB2 LOC100294145 PSMB8 KIFC1 PSMB9 MIR6834 MIR6873 RING1 BRD2 COL11A2 SLC39A7 HCG25 MIR5004 HLA-DQA1 HLA-DPB1 HLA-DOB RGL2 HLA-DQA2 HLA-DQB1-AS1 SYNGAP1 ZBTB22 HSD17B8 WDR46 ZBTB9

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