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See other HLA-DMB CNV Assays ›
Gene Symbol
HLA-DMB
Assay Reference Genome
Location

Chr.6:32937452 on build GRCh38
Cytoband
6p21.32
Assay ID Hs02328346_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 3109

Gene Name:

 major histocompatibility complex, class II, DM beta

Gene Aliases:

 D6S221E, RING7

Location:

 Chr.6:32934629-32941070 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 2 - Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-DMB NM_002118.4 NP_002109.2
AB209577.1 2 1746 BAD92814.1
AK295872.1
AK301017.1
AK315979.1
AY645722.1 AAV97947.1
BC027175.1 AAH27175.1
CD742571.1
CR407606.1 CAG28534.1
EL948395.1
U15085.1 AAB60387.1
Z23139.1 CAA80670.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2759417 Chr.6:32898012 - 32996319 on Build GRCh38 Gain BRD2 HLA-DMB LOC100294145 HLA-DMA
nsv483081 Chr.6:32882976 - 33031504 on Build GRCh38 Loss HLA-DOA BRD2 HLA-DMB LOC100294145 HLA-DMA
nsv1161376 Chr.6:32913750 - 32953997 on Build GRCh38 Duplication HLA-DMB HLA-DMA
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion ZBTB22 MSH5-SAPCD1 CSNK2B ZBTB9 MIR4646 B3GALT4 C6orf25 HSPA1A LSM2 HLA-DQA2 ATP6V1G2-DDX39B HLA-DPA1 ATP6V1G2 MIR6721 RING1 C2 APOM PPP1R2P1 DDX39B-AS1 PFDN6 MIR6834 HCG23 CUTA MCCD1 SNORD117 SNORD84 HLA-DQA1 HCG26 GPSM3 EGFL8 MIR5004 MIR6832 COL11A2 PSMB8 LY6G6C PPT2 SLC44A4 LY6G6D CLIC1 C6orf47 HLA-DRB5 LY6G5B AGPAT1 HLA-DPB2 PPT2-EGFL8 HLA-DRB1 CFB MIR1236 DXO HLA-DQB1-AS1 PRRC2A BAG6 VARS HCP5 HCG25 LOC100507547 SYNGAP1 HCG24 NCR3 ABHD16A LST1 RGL2 DDX39B MICB PSMB9 HLA-DMA GPANK1 HLA-DOA HLA-DOB LTA PRRT1 PHF1 MIR6833 DDAH2 MIR219A1 MIR3135B C4A HLA-DPB1 TNXB LOC100294145 ATF6B LOC102725068 HLA-DRB6 LY6G6E AGER KIFC1 NELFE SAPCD1-AS1 HSPA1L SLC39A7 LTB VPS52 VWA7 RPS18 LOC101929163 TNF STK19 SKIV2L HLA-DQB1 HLA-DQB2 MSH5 CYP21A1P RXRB SNORD48 HSPA1B SNORA38 NEU1 NOTCH4 CYP21A2 TAP1 MIR6873 SAPCD1 AIF1 ZBTB12 HSD17B8 NFKBIL1 BTNL2 HLA-DMB TAP2 TAPBP HLA-DRA PSMB8-AS1 TNXA BRD2 EHMT2 LOC100287329 C4B DAXX WDR46 C6orf10 LY6G6F PBX2 SNORD52 C2-AS1 RNF5 FKBPL LY6G5C C6orf48
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion ZBTB22 MSH5-SAPCD1 CSNK2B ZBTB9 MIR4646 B3GALT4 C6orf25 HSPA1A LSM2 HLA-DQA2 ATP6V1G2-DDX39B HLA-DPA1 ATP6V1G2 MIR6721 RING1 C2 APOM PPP1R2P1 DDX39B-AS1 PFDN6 MIR6834 HCG23 CUTA MCCD1 SNORD117 SNORD84 HLA-DQA1 HCG26 GPSM3 EGFL8 MIR5004 MIR6832 COL11A2 PSMB8 LY6G6C PPT2 SLC44A4 LY6G6D CLIC1 C6orf47 HLA-DRB5 LY6G5B AGPAT1 HLA-DPB2 PPT2-EGFL8 HLA-DRB1 CFB MIR1236 DXO HLA-DQB1-AS1 PRRC2A BAG6 VARS HCP5 HCG25 LOC100507547 SYNGAP1 HCG24 NCR3 ABHD16A LST1 RGL2 DDX39B MICB PSMB9 HLA-DMA GPANK1 HLA-DOA HLA-DOB LTA PRRT1 PHF1 MIR6833 DDAH2 MIR219A1 MIR3135B C4A HLA-DPB1 TNXB LOC100294145 ATF6B LOC102725068 HLA-DRB6 LY6G6E AGER KIFC1 NELFE SAPCD1-AS1 HSPA1L SLC39A7 LTB VPS52 VWA7 RPS18 LOC101929163 TNF STK19 SKIV2L HLA-DQB1 HLA-DQB2 MSH5 CYP21A1P RXRB SNORD48 HSPA1B SNORA38 NEU1 NOTCH4 CYP21A2 TAP1 MIR6873 SAPCD1 AIF1 ZBTB12 HSD17B8 NFKBIL1 BTNL2 HLA-DMB TAP2 TAPBP HLA-DRA PSMB8-AS1 TNXA BRD2 EHMT2 LOC100287329 C4B DAXX WDR46 C6orf10 LY6G6F PBX2 SNORD52 C2-AS1 RNF5 FKBPL LY6G5C C6orf48
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion HLA-DOA ZBTB22 HLA-DOB COL11A2 PSMB8 TAP1 MIR6873 ZBTB9 PHF1 B3GALT4 MIR219A1 MIR3135B HSD17B8 HLA-DQA2 HLA-DPA1 HLA-DPB1 HLA-DMB HLA-DPB2 TAP2 TAPBP LOC100294145 PSMB8-AS1 RING1 HLA-DQB1-AS1 KIFC1 PPP1R2P1 BRD2 PFDN6 SLC39A7 VPS52 DAXX MIR6834 WDR46 HCG25 CUTA RPS18 SYNGAP1 HCG24 HLA-DQA1 HLA-DQB1 HLA-DQB2 RGL2 RXRB MIR5004 PSMB9 HLA-DMA
nsv830633 Chr.6:32829085 - 32995634 on Build GRCh38 Loss PPP1R2P1 BRD2 PSMB8 HLA-DMB TAP1 TAP2 LOC100294145 PSMB8-AS1 PSMB9 HLA-DMA

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