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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2286895 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02378062_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 21 - Exon 22
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 NP_001080.2
AB070929.1 BAB86781.1
AB210044.1 BAE06126.1
BC140895.1
BC146866.1
BC151840.1
U78735.1 AAC50967.1
X97187.1 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication WASIR2 LINC00235 IGFALS MIR6767 LMF1 ZNF598 LOC105371038 NPW HBA1 ARHGDIG NTHL1 CCNF CACNA1H SLC9A3R2 LOC105371046 FAHD1 POLR3K PRSS29P C16orf59 ABCA3 MIR1225 PTX4 TPSG1 LOC105371049 SPSB3 FAM173A LOC107987233 MIR6859-4 SSTR5 AMDHD2 LOC729652 LOC100134368 EME2 DDX11L10 TPSB2 NDUFB10 LOC105371184 LMF1-AS1 ECI1 PRR35 RGS11 TMEM8A ERVK13-1 MEIOB UBE2I WDR90 FBXL16 HBQ1 UNKL RHOT2 MIR940 CLCN7 PRR25 RPS2 RNPS1 E4F1 KCTD5 MIR6768 HAGH SNRNP25 BAIAP3 GFER SSTR5-AS1 PGP ABCA17P TPSAB1 METRN HS3ST6 NPRL3 NTN3 HAGHL MIR4717 WFIKKN1 LOC652276 RAB26 LOC106660606 PRSS27 MIR3178 PDPK1 JMJD8 MRPS34 RHBDF1 MLST8 MSLN HBM TSR3 NME3 MIR5587 HBZ MIR6511B1 DNASE1L2 PDIA2 MRPL28 NHLRC4 SYNGR3 MSRB1 RPL23AP5 CRAMP1 RHBDL1 CAPN15 LOC100287175 SNORA64 MPG SNORA10 CCDC78 GNPTG CASKIN1 SNORD60 FLJ42627 NOXO1 MCRIP2 PKD1 IFT140 RPL3L LOC107984876 NARFL RNF151 WDR24 MAPK8IP3 MIR3177 RAB40C CHTF18 RPUSD1 RAB11FIP3 FAM234A DECR2 TPSD1 C16orf91 HN1L LOC101929280 GNG13 MIR3677 BRICD5 SNHG19 LUC7L MIR662 METTL26 TELO2 ATP6V0C TRAF7 LOC105371047 NME4 MIR3180-5 CCDC154 TBC1D24 SNHG9 TBL3 LOC105371045 STUB1 PIGQ CEMP1 MIR3176 LINC00254 TMEM204 TSC2 AXIN1 HBA2 MIR4516 NUBP2 SNORA78 SOX8 C1QTNF8
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss MIR4717 RAB26 LOC106660606 ZNF598 NPW MLST8 NTHL1 MIR3677 BRICD5 SNHG19 MIR6511B1 MIR940 DNASE1L2 SLC9A3R2 SYNGR3 RNPS1 ABCA3 TRAF7 E4F1 MIR1225 MIR3180-5 LOC105371049 TBL3 CASKIN1 SNORD60 NOXO1 PKD1 GFER TSC2 PGP MIR4516 ECI1
nsv571201 Chr.16:2255538 - 2365929 on Build GRCh38 Loss MIR4717 RNPS1 ABCA3 MIR3677 LOC106660606 MIR940 ABCA17P
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR4717 LOC652276 RAB26 LOC106660606 MIR6767 MIR3178 PDPK1 MLST8 MIR3677 BRICD5 SNHG19 CCNF MIR6511B1 MIR940 DNASE1L2 C16orf59 RNPS1 ATP6V0C ABCA3 TRAF7 E4F1 MIR1225 MIR3180-5 LOC105371049 TBC1D24 MIR6768 AMDHD2 LOC729652 CASKIN1 SNORD60 PKD1 CEMP1 TSC2 PGP ABCA17P MIR4516 NTN3 ECI1
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion MIR4717 RNPS1 ABCA3 TRAF7 E4F1 RAB26 LOC106660606 CASKIN1 SNORD60 MLST8 MIR3677 BRICD5 SNHG19 PGP MIR940 DNASE1L2 ECI1
nsv571202 Chr.16:2278649 - 2289619 on Build GRCh38 Loss ABCA3

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