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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2276320 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02412818_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Exon 33
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 33 6181 NP_001080.2
AB210044.1 32 6007 BAE06126.1
BC140895.1 30 5506
BC146866.1 30 5506
BC151840.1 33 6163
BP397501.1 1 58
U78735.1 33 6028 AAC50967.1
X97187.1 32 5816 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication UNKL RHBDF1 CLCN7 SNORA78 NPW RAB11FIP3 HS3ST6 TELO2 RPL3L LOC105371184 MPG ARHGDIG HAGH PTX4 NARFL CHTF18 SOX8 NTN3 SNORA10 NHLRC4 LINC00235 TSC2 LOC105371046 MIR662 MIR3177 NPRL3 MCRIP2 PRR35 TBL3 HBQ1 METRN GNG13 NUBP2 RAB26 ZNF598 JMJD8 IGFALS SNORA64 LOC729652 TPSG1 ABCA17P ERVK13-1 GNPTG MSLN RPUSD1 MAPK8IP3 CAPN15 MRPL28 ATP6V0C HBZ WFIKKN1 PRR25 LOC105371045 TRAF7 CRAMP1 TPSD1 MEIOB LMF1-AS1 LOC100287175 MIR1225 TPSB2 BRICD5 MIR5587 POLR3K SNHG9 HBM SPSB3 BAIAP3 MIR3178 SNORD60 WDR24 RAB40C CEMP1 TMEM8A CCNF TMEM204 MIR6768 TPSAB1 HBA1 MIR4516 MLST8 CCDC78 LINC00254 HBA2 MIR6511B1 RHBDL1 MIR4717 LOC107987233 LOC100134368 PKD1 MIR6767 LOC101929280 TBC1D24 CCDC154 PRSS27 LMF1 CACNA1H NME4 RNF151 IFT140 NDUFB10 LOC105371038 SSTR5-AS1 MIR940 NME3 DDX11L10 GFER MIR3677 RHOT2 MIR3176 EME2 HAGHL C16orf59 C16orf91 KCTD5 SSTR5 E4F1 RPL23AP5 STUB1 LOC105371047 AXIN1 MSRB1 UBE2I PDIA2 SLC9A3R2 NTHL1 LOC105371049 MIR3180-5 DECR2 MRPS34 PIGQ FAM173A TSR3 LOC107984876 LOC652276 FBXL16 SYNGR3 SNRNP25 FAM234A PRSS29P LUC7L ABCA3 METTL26 RGS11 HN1L RNPS1 PGP ECI1 PDPK1 LOC106660606 CASKIN1 WDR90 SNHG19 DNASE1L2 AMDHD2 FAHD1 FLJ42627 C1QTNF8 RPS2 MIR6859-4 NOXO1 WASIR2
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss E4F1 NPW MIR4516 MLST8 SLC9A3R2 NTHL1 LOC105371049 MIR6511B1 MIR3180-5 MIR4717 PKD1 SYNGR3 TRAF7 TSC2 ABCA3 MIR1225 MIR940 RNPS1 PGP TBL3 ECI1 LOC106660606 CASKIN1 BRICD5 GFER MIR3677 RAB26 SNHG19 DNASE1L2 ZNF598 SNORD60 NOXO1
nsv571201 Chr.16:2255538 - 2365929 on Build GRCh38 Loss ABCA17P ABCA3 MIR4717 MIR940 RNPS1 LOC106660606 MIR3677
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain ABCA17P C16orf59 E4F1 MIR6768 MIR4516 MLST8 ATP6V0C LOC105371049 MIR6511B1 MIR3180-5 MIR4717 PKD1 MIR6767 LOC652276 TRAF7 TBC1D24 NTN3 TSC2 ABCA3 MIR1225 MIR940 RNPS1 PGP ECI1 PDPK1 LOC106660606 CASKIN1 BRICD5 MIR3677 RAB26 SNHG19 DNASE1L2 AMDHD2 MIR3178 SNORD60 LOC729652 CEMP1 CCNF
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion ABCA3 E4F1 MIR940 RNPS1 PGP ECI1 LOC106660606 CASKIN1 BRICD5 MIR3677 MLST8 RAB26 SNHG19 DNASE1L2 SNORD60 MIR4717 TRAF7

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