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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2276320 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02412818_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Exon 33
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 33 6181 NP_001080.2
AB210044.1 32 6007 BAE06126.1
BC140895.1 30 5506
BC146866.1 30 5506
BC151840.1 33 6163
BP397501.1 1 58
U78735.1 33 6028 AAC50967.1
X97187.1 32 5816 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication PDIA2 FLJ42627 MIR662 FAHD1 DNASE1L2 TPSG1 HS3ST6 MIR3178 RHBDL1 MRPL28 LMF1-AS1 SNORD60 MIR3176 RNPS1 NME3 WASIR2 PTX4 EME2 NTHL1 MIR3177 NPRL3 SNHG19 WDR90 IGFALS BRICD5 SNORA10 LOC105371047 SLC9A3R2 MEIOB RAB11FIP3 LOC100134368 PRSS27 MIR6768 MIR4516 LINC00254 ARHGDIG GNG13 LINC00235 MAPK8IP3 HBZ C16orf91 RGS11 LOC107987233 JMJD8 RPUSD1 HBQ1 MIR5587 HN1L NTN3 ERVK13-1 RNF151 TPSD1 NDUFB10 SOX8 PGP WFIKKN1 LOC652276 MIR940 DDX11L10 MCRIP2 PIGQ LOC105371184 MIR6767 SYNGR3 SNORA64 AMDHD2 LOC107984876 MSLN MRPS34 NUBP2 LMF1 LOC729652 LOC106660606 LOC105371038 CCDC78 ABCA3 AXIN1 CAPN15 FAM234A CACNA1H CEMP1 PRR25 HAGHL SSTR5-AS1 CLCN7 HBA2 NHLRC4 LOC101929280 RPL3L RAB40C MIR1225 TSC2 NOXO1 PRSS29P RAB26 NPW TSR3 MIR6859-4 KCTD5 NME4 CRAMP1 METTL26 ECI1 ABCA17P TPSB2 TELO2 STUB1 LOC105371046 TPSAB1 RHOT2 C1QTNF8 TBL3 BAIAP3 PRR35 TBC1D24 SNORA78 LOC105371049 GFER RHBDF1 CCNF LOC105371045 C16orf59 UNKL METRN PDPK1 GNPTG CHTF18 E4F1 RPL23AP5 DECR2 SNHG9 RPS2 MIR3180-5 HBM LUC7L ATP6V0C SPSB3 MIR4717 PKD1 LOC100287175 MIR3677 MSRB1 MPG SSTR5 HBA1 TMEM204 POLR3K NARFL CCDC154 MIR6511B1 WDR24 FBXL16 FAM173A UBE2I ZNF598 SNRNP25 HAGH TRAF7 IFT140 MLST8 TMEM8A CASKIN1
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss DNASE1L2 MIR1225 TSC2 PGP NOXO1 SNORD60 RNPS1 MIR940 E4F1 RAB26 NPW NTHL1 MIR3180-5 SNHG19 MIR4717 PKD1 BRICD5 SYNGR3 MIR3677 SLC9A3R2 ECI1 LOC106660606 ABCA3 TBL3 MIR4516 MIR6511B1 LOC105371049 GFER ZNF598 TRAF7 MLST8 CASKIN1
nsv457353 Chr.16:2255538 - 2365929 on Build GRCh38 Loss RNPS1 MIR3677 MIR940 ABCA17P LOC106660606 MIR4717 ABCA3
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain C16orf59 NTN3 DNASE1L2 PDPK1 MIR1225 MIR3178 TSC2 PGP SNORD60 RNPS1 LOC652276 MIR940 E4F1 RAB26 MIR3180-5 SNHG19 ATP6V0C MIR4717 PKD1 BRICD5 MIR6767 AMDHD2 MIR3677 ECI1 ABCA17P LOC729652 LOC106660606 ABCA3 MIR6768 MIR4516 MIR6511B1 TBC1D24 LOC105371049 TRAF7 MLST8 CEMP1 CCNF CASKIN1
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion MIR3677 ECI1 LOC106660606 DNASE1L2 ABCA3 PGP SNORD60 RNPS1 MIR940 E4F1 RAB26 TRAF7 SNHG19 MIR4717 MLST8 BRICD5 CASKIN1

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