Genomic Map
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Target Gene Details
Entrez Gene ID: | 5927 |
Gene Name: | lysine demethylase 5A |
Gene Aliases: |
RBBP-2, RBBP2, RBP2 |
Location: |
Chr.12:280057-389455 on Build GRCh38 |
Assay Gene Location: | Within Exon 28 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| KDM5A | NM_001042603.2 | 28 | 6151 | NP_001036068.1 |
| AB209999.1 | 28 | 5997 | ||
| AF007135.1 | 1 | 1012 | ||
| S66431.1 | 29 | 6035 | AAB28544.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv1050912 | Chr.12:262244 - 292982 on Build GRCh38 | Gain |
 SLC6A13
KDM5A
|
| esv2759875 | Chr.12:225844 - 881378 on Build GRCh38 | Gain+Loss |
LOC105369595
NINJ2
LOC100049716
SLC6A13
CCDC77
WNK1
KDM5A
B4GALNT3
LOC102723544
|
| nsv1050781 | Chr.12:212187 - 674733 on Build GRCh38 | Loss |
LOC105369595
NINJ2
LOC100049716
SLC6A13
CCDC77
KDM5A
B4GALNT3
LOC102723544
SLC6A12
|
| nsv570 | Chr.12:257625 - 286657 on Build GRCh38 | Deletion |
SLC6A13
KDM5A
|
| esv34939 | Chr.12:262620 - 323985 on Build GRCh38 | Loss |
SLC6A13
KDM5A
|
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Additional Information:
For this assay, SNP(s) [rs76286555] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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