Hs02517957_cn

• Gene Symbol: FAM3A
• Assay Reference Genome Location: Chr.X:154506848 on build GRCh38
• Cytoband: Xq28

Target Gene Details

• Entrez Gene ID: 60343
• Gene Name: family with sequence similarity 3 member A
• Gene Aliases: 2.19, DLD, DXS560S, XAP-7
• Location: Chr.X:154506159-154516249 on Build GRCh38
• Assay Gene Location: Within Exon 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAM3A	NM_001171132.2	10	1029	NP_001164603.1
	NM_001171133.2	9	915	NP_001164604.1
	NM_001171134.2	8	1075	NP_001164605.1
	NM_001282311.1	10	1224	NP_001269240.1
	NM_001282312.1	10	970	NP_001269241.1
	NM_021806.3	9	1126	NP_068578.2
	XM_005274714.3	11	1095	XP_005274771.1
	XM_005274716.3	11	1074	XP_005274773.1
	XM_005277879.4	9	984	XP_005277936.1
	XM_006724831.2	11	1098	XP_006724894.1
	XM_006724832.3	10	1059	XP_006724895.1
	XM_006724833.2	10	1023	XP_006724896.1
	XM_006724834.2	10	1211	XP_006724897.1
	XM_011531185.2	8	656	XP_011529487.1
	XM_017029699.1	9	1371	XP_016885188.1
	XM_017029700.1	9	1346	XP_016885189.1
	XM_017029701.1	10	1249	XP_016885190.1
	XM_017029702.1	9	862	XP_016885191.1
	AK024601.1	10	987
	AK057945.1	10	844
	AK124890.1	6	3317
	AK294116.1	8	1038
	AK314682.1	9	1044
	BC002934.1	10	1128	AAH02934.1
	BC008912.2	9	777	AAH08912.1
	CX867071.1
	X87193.1	9	933	CAA60645.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv33784	Chr.X:153962665 - 155699588 on Build GRCh38	Gain+Loss	DNASE1L1 VBP1 MPP1 OPN1MW G6PD IRAK1 LOC107987332 MIR1184-3 OPN1MW2 IKBKG CMC4 SMIM9 F8A1 LAGE3 FUNDC2 MIR6858 H2AFB2 CTAG1A MIR664B FAM50A F8 F8A2 RPL10 LOC105373386 CH17-340M24.3 MIR1184-1 GAB3 MIR3202-1 FAM3A TKTL1 MTCP1 SPRY3 TMEM187 RAB39B TMLHE OPN1LW CTAG1B ATP6AP1 SNORA56 H2AFB3 DKC1 LOC101927830 BRCC3 SNORA36A MIR718 FLNA F8A3 CTAG2 HCFC1-AS1 FAM223B OPN1MW3 TEX28 MIR3202-2 TAZ MECP2 SLC10A3 GDI1 TMLHE-AS1 FAM223A EMD H2AFB1 UBL4A HCFC1 PLXNA3 SNORA70 MIR1184-2 CLIC2
nsv519042	Chr.X:154082978 - 154601444 on Build GRCh38	Gain	OPN1LW DNASE1L1 ATP6AP1 OPN1MW G6PD LOC107987332 OPN1MW2 IKBKG LAGE3 MIR6858 FLNA CTAG1A FAM50A RPL10 OPN1MW3 LOC105373386 CH17-340M24.3 TEX28 FAM3A TKTL1 TAZ MECP2 SLC10A3 GDI1 FAM223A EMD UBL4A PLXNA3 SNORA70
esv33199	Chr.X:153065734 - 154591978 on Build GRCh38	Gain+Loss	LOC107983954 PNCK PDZD4 DNASE1L1 PNMA6A L1CAM MAGEA1 OPN1MW G6PD SRPK3 IRAK1 LOC107987332 ARHGAP4 OPN1MW2 LOC105373383 IKBKG TREX2 LAGE3 SLC6A8 MIR6858 ABCD1 CTAG1A FAM50A RPL10 NAA10 RENBP LOC105373386 CH17-340M24.3 MIR3202-1 FAM3A TKTL1 TMEM187 DUSP9 HAUS7 PLXNB3 LOC105373377 OPN1LW ATP6AP1 IDH3G LCA10 LOC105373381 LOC105373378 MIR718 FLNA BCAP31 FAM58A HCFC1-AS1 ATP2B3 OPN1MW3 TEX28 SSR4 MIR3202-2 ZFP92 TAZ MECP2 ZNF275 BGN SLC10A3 GDI1 FAM223A EMD AVPR2 UBL4A HCFC1 PLXNA3 SNORA70
nsv508816	Chr.X:154492171 - 154591783 on Build GRCh38	Insertion	FAM3A CTAG1A IKBKG FAM223A G6PD

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

antimicrobial response protein

Gene Ontology Categories:

Process(es)

biological_process

Function(s)

molecular_function