Hs02525455_cn

• Gene Symbol: TRMT2A
• Assay Reference Genome Location: Chr.22:20113518 on build GRCh38
• Cytoband: 22q11.21

Target Gene Details

• Entrez Gene ID: 27037
• Gene Name: tRNA methyltransferase 2 homolog A
• Gene Aliases: HTF9C
• Location: Chr.22:20111866-20117305 on Build GRCh38
• Assay Gene Location: Overlaps Intron 8 - Exon 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TRMT2A	NM_001257994.1			NP_001244923.1
	NM_022727.5			NP_073564.3
	NM_182984.4			NP_892029.2
	XM_011530139.2			XP_011528441.1
	XM_011530141.1			XP_011528443.1
	XM_011530142.2			XP_011528444.1
	XM_017028770.1			XP_016884259.1
	AK025106.1			BAB15067.1
	AK057029.1			BAB71349.1
	BC013352.2			AAH13352.2
	BC017184.2			AAH17184.2
	BC108251.1			AAI08252.1
	CR456354.1			CAG30240.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv726n67	Chr.22:20070444 - 20324465 on Build GRCh38	Gain	LINC00896 ZDHHC8 RTN4R RANBP1 CCDC188 LOC440792 DGCR8 TRMT2A MIR6816 MIR1306 DGCR6L MIR1286 MIR3618 LOC284865
esv3893434	Chr.22:19470889 - 20343372 on Build GRCh38	Gain	TBX1 RANBP1 CCDC188 DGCR8 GNB1L SEPT5-GP1BB TANGO2 COMT MIR1306 DGCR6L MIR185 ARVCF GP1BB LINC00896 SEPT5 UFD1L LINC00895 ZDHHC8 RTN4R TXNRD2 LOC440792 TRMT2A C22orf29 MIR4761 LOC101927859 MIR6816 CLDN5 MIR1286 MIR3618 CDC45 LOC284865
esv3647284	Chr.22:19985583 - 20137122 on Build GRCh38	Gain	TANGO2 MIR6816 ZDHHC8 MIR1306 RANBP1 MIR185 MIR3618 ARVCF DGCR8 TRMT2A
nsv828938	Chr.22:19691069 - 20324465 on Build GRCh38	Gain	TBX1 RANBP1 CCDC188 DGCR8 GNB1L SEPT5-GP1BB TANGO2 COMT MIR1306 DGCR6L MIR185 ARVCF GP1BB LINC00896 SEPT5 ZDHHC8 RTN4R TXNRD2 LOC440792 TRMT2A C22orf29 MIR4761 MIR6816 MIR1286 MIR3618 LOC284865
nsv828939	Chr.22:19696032 - 20324465 on Build GRCh38	Loss	TBX1 RANBP1 CCDC188 DGCR8 GNB1L SEPT5-GP1BB TANGO2 COMT MIR1306 DGCR6L MIR185 ARVCF GP1BB LINC00896 SEPT5 ZDHHC8 RTN4R TXNRD2 LOC440792 TRMT2A C22orf29 MIR4761 MIR6816 MIR1286 MIR3618 LOC284865
esv2758825	Chr.22:20038970 - 20321924 on Build GRCh38	Loss	LINC00896 ZDHHC8 RTN4R RANBP1 CCDC188 LOC440792 DGCR8 TRMT2A TANGO2 MIR6816 MIR1306 DGCR6L MIR1286 MIR3618 LOC284865
dgv4480n100	Chr.22:20069620 - 20262667 on Build GRCh38	Gain	LINC00896 MIR6816 ZDHHC8 MIR1306 RTN4R MIR1286 RANBP1 CCDC188 MIR3618 DGCR8 TRMT2A LOC284865
nsv471183	Chr.22:20018517 - 20319470 on Build GRCh38	Loss	LINC00896 ZDHHC8 RTN4R RANBP1 CCDC188 LOC440792 DGCR8 TRMT2A TANGO2 MIR6816 MIR1306 DGCR6L MIR1286 MIR185 MIR3618 LOC284865
dgv7983n54	Chr.22:19762002 - 20321870 on Build GRCh38	Gain	LINC00896 TBX1 ZDHHC8 RTN4R RANBP1 CCDC188 TXNRD2 LOC440792 DGCR8 TRMT2A GNB1L C22orf29 MIR4761 TANGO2 MIR6816 COMT MIR1306 DGCR6L MIR1286 MIR185 MIR3618 ARVCF LOC284865
nsv834133	Chr.22:20029363 - 20176708 on Build GRCh38	Loss	TANGO2 MIR6816 ZDHHC8 MIR1306 RANBP1 CCDC188 MIR185 MIR3618 DGCR8 TRMT2A
nsv953027	Chr.22:20085378 - 20303977 on Build GRCh38	Deletion	LINC00896 ZDHHC8 RTN4R RANBP1 CCDC188 LOC440792 DGCR8 TRMT2A MIR6816 MIR1306 MIR1286 MIR3618 LOC284865

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

RNA methyltransferase

Gene Ontology Categories:

Process(es)

RNA methylation
RNA processing

Function(s)

nucleotide binding
RNA methyltransferase activity
poly(A) RNA binding