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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2283298 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02561279_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Exon 26
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 26 4635 NP_001080.2
AB070929.1 23 3965 BAB86781.1
AB210044.1 25 4461 BAE06126.1
BC140895.1 23 3960
BC146866.1 23 3960
BC151840.1 26 4617
U78735.1 26 4482 AAC50967.1
X97187.1 25 4270 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication FAM173A STUB1 BRICD5 SNORA78 MLST8 TPSB2 E4F1 CRAMP1 ERVK13-1 BAIAP3 FAM234A LOC105371047 MPG TMEM8A RPUSD1 PRSS27 RPL3L RHBDF1 NOXO1 MIR6511B1 TBL3 MIR3180-5 NPRL3 LMF1 MIR6768 NTHL1 RGS11 NME3 MCRIP2 CLCN7 PRR35 AMDHD2 C1QTNF8 TBC1D24 LOC105371045 MIR3178 ABCA17P ECI1 MIR4516 JMJD8 PRR25 SOX8 LOC105371184 LOC107984876 MIR6767 MIR4717 CCDC154 CASKIN1 SYNGR3 SSTR5-AS1 DECR2 WFIKKN1 LOC100134368 SNHG9 RAB11FIP3 CCDC78 RHOT2 SNRNP25 MIR1225 TSR3 NARFL PKD1 METTL26 MIR940 HS3ST6 HBM EME2 LOC101929280 FBXL16 MIR662 MIR3677 GFER TRAF7 NHLRC4 CAPN15 RNF151 NME4 TELO2 WDR90 RHBDL1 POLR3K LOC100287175 LOC729652 GNPTG SLC9A3R2 NPW CCNF SPSB3 MEIOB LOC105371046 HN1L TSC2 PIGQ PDPK1 IFT140 RPS2 HBQ1 HBA1 PRSS29P MRPL28 TMEM204 AXIN1 LOC106660606 LOC105371038 LINC00235 KCTD5 ARHGDIG MRPS34 HAGH HBZ CEMP1 PTX4 WASIR2 NUBP2 C16orf91 LINC00254 ATP6V0C METRN MAPK8IP3 ZNF598 MSRB1 SNORA10 RAB26 SNORD60 ABCA3 MIR6859-4 MIR3176 HBA2 SNORA64 SSTR5 MIR3177 TPSAB1 TPSG1 LMF1-AS1 PGP PDIA2 UNKL GNG13 LOC107987233 LOC105371049 NDUFB10 RPL23AP5 IGFALS LOC652276 HAGHL SNHG19 RNPS1 WDR24 CACNA1H FLJ42627 DDX11L10 FAHD1 RAB40C CHTF18 DNASE1L2 TPSD1 NTN3 LUC7L C16orf59 MSLN UBE2I MIR5587
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss BRICD5 PGP MLST8 SLC9A3R2 NPW ECI1 MIR4516 E4F1 TSC2 MIR4717 LOC105371049 CASKIN1 SYNGR3 LOC106660606 SNHG19 NOXO1 MIR6511B1 RNPS1 MIR1225 PKD1 TBL3 MIR3180-5 MIR940 DNASE1L2 MIR3677 ZNF598 GFER TRAF7 RAB26 NTHL1 SNORD60 ABCA3
nsv571201 Chr.16:2255538 - 2365929 on Build GRCh38 Loss RNPS1 MIR4717 MIR3677 MIR940 LOC106660606 ABCA17P ABCA3
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain BRICD5 LOC729652 PGP AMDHD2 TBC1D24 MLST8 MIR3178 ABCA17P ECI1 CCNF MIR4516 E4F1 TSC2 MIR6767 MIR4717 LOC105371049 CASKIN1 PDPK1 LOC652276 LOC106660606 SNHG19 MIR6511B1 RNPS1 CEMP1 MIR1225 PKD1 MIR3180-5 MIR940 ATP6V0C DNASE1L2 MIR6768 MIR3677 TRAF7 RAB26 NTN3 C16orf59 SNORD60 ABCA3
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion SNHG19 RNPS1 BRICD5 PGP MIR940 MLST8 ECI1 E4F1 DNASE1L2 MIR4717 MIR3677 TRAF7 CASKIN1 RAB26 LOC106660606 SNORD60 ABCA3
nsv571202 Chr.16:2278649 - 2289619 on Build GRCh38 Loss ABCA3

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