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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2283298 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02561279_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Exon 26
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 26 4635 NP_001080.2
AB070929.1 23 3965 BAB86781.1
AB210044.1 25 4461 BAE06126.1
BC140895.1 23 3960
BC146866.1 23 3960
BC151840.1 26 4617
U78735.1 26 4482 AAC50967.1
X97187.1 25 4270 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication ABCA3 GNPTG SOX8 POLR3K NDUFB10 LOC107987233 ERVK13-1 BRICD5 RGS11 RHOT2 ECI1 CCDC78 DNASE1L2 RHBDF1 C16orf59 TBC1D24 KCTD5 CLCN7 METTL26 MCRIP2 C1QTNF8 ZNF598 TSC2 MSLN HBA1 MIR4717 MIR4516 MIR5587 MSRB1 TPSAB1 MIR1225 MRPL28 TMEM8A LOC107984876 RPL3L SNHG19 RPS2 PIGQ SNORA78 GFER MIR6767 STUB1 RAB26 SNHG9 LOC106660606 TRAF7 ATP6V0C TPSD1 IGFALS MAPK8IP3 MIR662 DECR2 PRSS29P UBE2I LOC105371047 HN1L HAGHL RNF151 PRR35 SSTR5-AS1 FAM234A HBM CAPN15 RPUSD1 CRAMP1 TELO2 PGP ARHGDIG GNG13 WDR24 LOC105371184 MIR3180-5 SNORD60 RAB11FIP3 HBQ1 EME2 LUC7L FAM173A NME4 PDPK1 MLST8 JMJD8 AXIN1 CHTF18 C16orf91 METRN RNPS1 NUBP2 LOC101929280 E4F1 CACNA1H SNORA10 HBZ MIR940 MIR6768 CCDC154 TMEM204 WASIR2 SYNGR3 WDR90 MPG NTHL1 MIR6511B1 NARFL MRPS34 WFIKKN1 MIR3178 BAIAP3 TPSB2 FBXL16 TBL3 NTN3 TPSG1 LOC105371046 FAHD1 LOC105371045 HBA2 NME3 LMF1 HS3ST6 UNKL PTX4 AMDHD2 SSTR5 LOC105371038 NPW NOXO1 LOC652276 ABCA17P PRSS27 CEMP1 SPSB3 IFT140 MIR6859-4 CASKIN1 MIR3677 SNORA64 LOC729652 PDIA2 LOC100287175 PKD1 LINC00254 CCNF LOC100134368 MEIOB RAB40C NPRL3 RHBDL1 LMF1-AS1 PRR25 NHLRC4 FLJ42627 RPL23AP5 LOC105371049 SLC9A3R2 MIR3177 HAGH SNRNP25 MIR3176 DDX11L10 LINC00235 TSR3
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss NOXO1 ABCA3 SNHG19 RNPS1 E4F1 GFER CASKIN1 RAB26 BRICD5 MIR940 MIR3677 LOC106660606 ECI1 DNASE1L2 TRAF7 SYNGR3 NTHL1 PKD1 MIR6511B1 TBL3 LOC105371049 SLC9A3R2 PGP ZNF598 TSC2 MIR3180-5 SNORD60 MIR4717 MIR4516 MLST8 MIR1225 NPW
nsv457353 Chr.16:2255538 - 2365929 on Build GRCh38 Loss MIR940 MIR3677 LOC106660606 ABCA3 RNPS1 ABCA17P MIR4717
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain LOC652276 ABCA3 SNHG19 RNPS1 ABCA17P CEMP1 E4F1 CASKIN1 MIR6767 RAB26 BRICD5 MIR940 MIR3677 LOC106660606 MIR6768 ECI1 DNASE1L2 TRAF7 LOC729652 ATP6V0C C16orf59 TBC1D24 PKD1 CCNF MIR6511B1 MIR3178 NTN3 LOC105371049 PGP TSC2 MIR3180-5 SNORD60 AMDHD2 MIR4717 MIR4516 PDPK1 MLST8 MIR1225
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion ABCA3 SNHG19 RNPS1 E4F1 CASKIN1 RAB26 BRICD5 PGP MIR940 MIR3677 LOC106660606 ECI1 DNASE1L2 TRAF7 SNORD60 MIR4717 MLST8
nsv571202 Chr.16:2278649 - 2289619 on Build GRCh38 Loss ABCA3

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