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See other CDT1 CNV Assays ›
Gene Symbol
CDT1
Assay Reference Genome
Location

Chr.16:88807029 on build GRCh38
Cytoband
16q24.3
Assay ID Hs02638533_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 81620

Gene Name:

 chromatin licensing and DNA replication factor 1

Gene Aliases:

 DUP, RIS2

Location:

 Chr.16:88803778-88809258 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 7 - Exon 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CDT1 NM_030928.3 NP_112190.2
AB053172.1 BAB61878.1
AF070552.1
AF321125.1 AAG45181.1
BC000137.2 AAH00137.2
BC008676.1 AAH08676.1
BC008860.2 AAH08860.2
BC009410.1 AAH09410.1
BC014202.2 AAH14202.2
BC021126.1
BC049205.1 AAH49205.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1063024 Chr.16:88707330 - 89238482 on Build GRCh38 Gain ZNF778 SLC22A31 LOC101927793 LOC400558 ACSF3 MIR4722 PIEZO1 GALNS APRT CDT1 CBFA2T3 LINC00304 LOC339059 LOC107987238 TRAPPC2L LOC105371409 CDH15 CTU2 PABPN1L LOC100289580 LOC100129697
nsv471115 Chr.16:88801844 - 89197442 on Build GRCh38 Loss SLC22A31 LOC101927793 LOC400558 ACSF3 GALNS APRT CDT1 CBFA2T3 LINC00304 LOC107987238 TRAPPC2L LOC105371409 CDH15 PABPN1L LOC100129697
dgv3064n100 Chr.16:88683753 - 88846491 on Build GRCh38 Gain LOC339059 LOC107987238 MIR4722 PIEZO1 GALNS APRT CDT1 SNAI3-AS1 CTU2 LOC100289580 RNF166 SNAI3
nsv573674 Chr.16:88738775 - 89325907 on Build GRCh38 Gain ZNF778 SLC22A31 LOC101927793 LOC400558 LOC100287036 ACSF3 PIEZO1 GALNS APRT CDT1 CBFA2T3 LINC00304 LOC105371414 LOC339059 LOC107987238 TRAPPC2L ANKRD11 LOC105371409 CDH15 PABPN1L LOC100289580 LOC100129697
nsv471117 Chr.16:88805821 - 88838392 on Build GRCh38 Gain LOC107987238 GALNS APRT CDT1
nsv952071 Chr.16:88790893 - 89019992 on Build GRCh38 Deletion LOC107987238 LOC101927793 TRAPPC2L LOC105371409 GALNS APRT CDT1 CBFA2T3 PABPN1L LOC100129697
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss SNORD68 SLC22A31 TUBB8P7 GALNS LOC105371419 IL17C CDT1 CHMP1A LOC105371414 TCF25 DEF8 ANKRD11 CYBA SPATA33 TUBB3 LOC101927817 LOC400558 MC1R LOC107984817 APRT FANCA DPEP1 LOC339059 TRAPPC2L LOC105371409 CDH15 URAHP SNAI3-AS1 GAS8 SPIRE2 PABPN1L LOC100289580 LOC100129697 DBNDD1 ZNF778 LOC100287036 PIEZO1 CBFA2T3 SNAI3 RPL13 CTU2 SPATA2L LOC101927793 VPS9D1-AS1 ACSF3 MIR4722 CENPBD1 FAM157C SPG7 VPS9D1 LINC00304 RNF166 CPNE7 ZNF276 GAS8-AS1 LOC107987238 CDK10 PRDM7 AFG3L1P MVD
nsv1063441 Chr.16:88767066 - 88861882 on Build GRCh38 Loss LOC107987238 TRAPPC2L PIEZO1 GALNS APRT CDT1
dgv37n68 Chr.16:88767460 - 88944903 on Build GRCh38 Loss LOC107987238 LOC101927793 TRAPPC2L LOC105371409 PIEZO1 GALNS APRT CDT1 CBFA2T3 PABPN1L LOC100129697
dgv5319n54 Chr.16:88804814 - 88809520 on Build GRCh38 Loss APRT CDT1
esv3639555 Chr.16:88745961 - 88899576 on Build GRCh38 Gain LOC107987238 LOC101927793 TRAPPC2L PIEZO1 GALNS APRT CDT1 CBFA2T3 PABPN1L
nsv573712 Chr.16:88796728 - 88809084 on Build GRCh38 Loss CDT1
dgv3065n100 Chr.16:88711587 - 88927172 on Build GRCh38 Gain LOC101927793 MIR4722 PIEZO1 GALNS APRT CDT1 CBFA2T3 LOC339059 LOC107987238 TRAPPC2L CTU2 PABPN1L LOC100289580

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More Information


Additional Information:

For this assay, SNP(s) [rs74035836] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

DNA metabolism protein

Gene Ontology Categories:

Function(s) Process(es)


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