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See other CDT1 CNV Assays ›
Gene Symbol
CDT1
Assay Reference Genome
Location

Chr.16:88807029 on build GRCh38
Cytoband
16q24.3
Assay ID Hs02638533_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 81620

Gene Name:

 chromatin licensing and DNA replication factor 1

Gene Aliases:

 DUP, RIS2

Location:

 Chr.16:88803778-88809258 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 7 - Exon 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CDT1 NM_030928.3 NP_112190.2
AB053172.1 BAB61878.1
AF070552.1
AF321125.1 AAG45181.1
BC000137.2 AAH00137.2
BC008676.1 AAH08676.1
BC008860.2 AAH08860.2
BC009410.1 AAH09410.1
BC014202.2 AAH14202.2
BC021126.1
BC049205.1 AAH49205.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1063024 Chr.16:88707330 - 89238482 on Build GRCh38 Gain PIEZO1 MIR4722 SLC22A31 LOC101927793 GALNS LOC107987238 LOC100289580 ACSF3 CBFA2T3 CDH15 APRT PABPN1L TRAPPC2L LOC339059 CDT1 CTU2 LINC00304 LOC400558 ZNF778 LOC100129697 LOC105371409
nsv457617 Chr.16:88801844 - 88829729 on Build GRCh38 Gain CDT1 GALNS LOC107987238 APRT
dgv3064n100 Chr.16:88683753 - 88846491 on Build GRCh38 Gain LOC339059 CDT1 RNF166 CTU2 PIEZO1 MIR4722 SNAI3-AS1 SNAI3 GALNS LOC107987238 LOC100289580 APRT
nsv573674 Chr.16:88738775 - 89325907 on Build GRCh38 Gain LOC100287036 PIEZO1 SLC22A31 LOC101927793 GALNS LOC107987238 LOC100289580 ANKRD11 ACSF3 CBFA2T3 CDH15 APRT PABPN1L TRAPPC2L LOC339059 CDT1 LOC105371414 LINC00304 LOC400558 ZNF778 LOC100129697 LOC105371409
nsv952071 Chr.16:88790893 - 89019992 on Build GRCh38 Deletion TRAPPC2L CDT1 LOC101927793 GALNS LOC107987238 LOC100129697 CBFA2T3 APRT PABPN1L LOC105371409
nsv521217 Chr.16:88805821 - 89174375 on Build GRCh38 Loss LOC101927793 GALNS LOC107987238 ACSF3 CBFA2T3 CDH15 APRT PABPN1L TRAPPC2L CDT1 LINC00304 LOC400558 LOC100129697 LOC105371409
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss LOC100287036 PIEZO1 URAHP VPS9D1 ANKRD11 PABPN1L TUBB8P7 FAM157C ZNF276 LINC00304 SPG7 PRDM7 MC1R SNAI3-AS1 SLC22A31 GALNS LOC100289580 CDH15 CDT1 RNF166 LOC400558 AFG3L1P GAS8-AS1 MIR4722 LOC101927793 CPNE7 LOC107987238 ACSF3 TUBB3 APRT TRAPPC2L SPIRE2 TCF25 CTU2 LOC107984817 DEF8 DPEP1 ZNF778 LOC100129697 CYBA SPATA2L SNORD68 VPS9D1-AS1 GAS8 IL17C MVD CBFA2T3 DBNDD1 LOC105371419 CDK10 LOC339059 FANCA LOC101927817 RPL13 LOC105371414 CHMP1A CENPBD1 SNAI3 SPATA33 LOC105371409
nsv1063441 Chr.16:88767066 - 88861882 on Build GRCh38 Loss TRAPPC2L CDT1 PIEZO1 GALNS LOC107987238 APRT
dgv37n68 Chr.16:88767460 - 88944903 on Build GRCh38 Loss TRAPPC2L CDT1 PIEZO1 LOC101927793 GALNS LOC107987238 LOC100129697 CBFA2T3 APRT PABPN1L LOC105371409
esv3639555 Chr.16:88745961 - 88899576 on Build GRCh38 Gain TRAPPC2L CDT1 PIEZO1 LOC101927793 GALNS LOC107987238 CBFA2T3 APRT PABPN1L
nsv573715 Chr.16:88804814 - 88808224 on Build GRCh38 Loss CDT1
nsv1061256 Chr.16:88711587 - 89013365 on Build GRCh38 Gain PIEZO1 MIR4722 LOC101927793 GALNS LOC107987238 LOC100289580 CBFA2T3 APRT PABPN1L TRAPPC2L LOC339059 CDT1 CTU2 LOC100129697 LOC105371409
nsv573712 Chr.16:88796728 - 88809084 on Build GRCh38 Loss CDT1

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More Information


Additional Information:

For this assay, SNP(s) [rs74035836] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

DNA metabolism protein

Gene Ontology Categories:

Function(s) Process(es)


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