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See other APC2 CNV Assays ›
Gene Symbol
APC2
Assay Reference Genome
Location

Chr.19:1453300 on build GRCh38
Cytoband
19p13.3
Assay ID Hs02640511_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10297

Gene Name:

 APC2, WNT signaling pathway regulator

Gene Aliases:

 APCL

Location:

 Chr.19:1446268-1473244 on Build GRCh38

Assay Gene Location:

 Within Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
APC2 NM_005883.2 3 403 NP_005874.1
XM_005259475.2 3 287 XP_005259532.1
XM_006722607.2 3 287 XP_006722670.1
XM_006722608.3 3 548 XP_006722671.2
XM_006722609.3 3 357 XP_006722672.1
XM_006722610.3 3 547 XP_006722673.2
AB012162.1 2 1908 BAA34611.1
AF110334.1 3 258 AAD28183.1
AF128222.1 2 399 AAF01784.1
AJ012652.1 2 399 CAB61207.1
AL078616.1 3 264
BC032573.1 3 403

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv32942 Chr.19:1320268 - 1999205 on Build GRCh38 Gain+Loss BTBD2 SCAMP4 GAMT PLK5 MBD3 LOC100288123 CSNK1G2 ONECUT3 APC2 TCF3 ADAMTSL5 ATP8B3 KLF16 DAZAP1 CSNK1G2-AS1 NDUFS7 MIR1909 RPS15 C19orf25 ADAT3 UQCR11 ABHD17A MEX3D REEP6 PCSK4 MUM1 REXO1
nsv578279 Chr.19:1413575 - 1530061 on Build GRCh38 Gain RPS15 PLK5 ADAMTSL5 REEP6 PCSK4 DAZAP1 C19orf25 APC2
nsv833705 Chr.19:1380125 - 1544934 on Build GRCh38 Loss RPS15 GAMT PLK5 ADAMTSL5 REEP6 PCSK4 DAZAP1 C19orf25 NDUFS7 APC2
esv2758743 Chr.19:951641 - 1544934 on Build GRCh38 Gain+Loss GAMT ATP5D PLK5 APC2 GPX4 STK11 ADAMTSL5 DAZAP1 NDUFS7 MIDN ARID3A RPS15 RNU6-2 CIRBP GRIN3B TMEM259 C19orf25 C19orf24 CNN2 CBARP ABCA7 CIRBP-AS1 REEP6 POLR2E LOC102725180 WDR18 PCSK4 LOC105372235 SBNO2 EFNA2 MUM1 ARHGAP45
nsv953942 Chr.19:1371602 - 2057401 on Build GRCh38 Deletion BTBD2 SCAMP4 GAMT PLK5 MBD3 LOC100288123 CSNK1G2 ONECUT3 APC2 TCF3 ADAMTSL5 ATP8B3 KLF16 DAZAP1 CSNK1G2-AS1 NDUFS7 MIR1909 RPS15 MKNK2 C19orf25 ADAT3 UQCR11 ABHD17A MEX3D REEP6 PCSK4 MUM1 REXO1
nsv470105 Chr.19:1444420 - 1526614 on Build GRCh38 Gain PLK5 ADAMTSL5 REEP6 PCSK4 C19orf25 APC2

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More Information


Additional Information:

For this assay, SNP(s) [rs78476902] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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