Genomic Map
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Target Gene Details
Entrez Gene ID: | 3978 |
Gene Name: | DNA ligase 1 |
Gene Aliases: |
- |
Location: |
Chr.19:48115445-48170603 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 22 - Exon 22 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LIG1 | NM_000234.2 | NP_000225.1 | ||
| NM_001289063.1 | NP_001275992.1 | |||
| NM_001289064.1 | NP_001275993.1 | |||
| NM_001320970.1 | NP_001307899.1 | |||
| NM_001320971.1 | NP_001307900.1 | |||
| NR_110296.1 | ||||
| NR_135497.1 | ||||
| NR_135498.1 | ||||
| NR_135499.1 | ||||
| NR_135500.1 | ||||
| NR_135501.1 | ||||
| XM_017026809.1 | XP_016882298.1 | |||
| AB208791.1 | BAD92028.1 | |||
| AK225863.1 | ||||
| AK297296.1 | ||||
| AK300370.1 | ||||
| AK300607.1 | ||||
| AK314210.1 | ||||
| BC108318.1 | AAI08319.1 | |||
| BC110622.2 | AAI10623.1 | |||
| M36067.1 | AAA59518.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv833853 | Chr.19:47982539 - 48184317 on Build GRCh38 | Loss |
 C19orf68
ELSPBP1
LIG1
PLA2G4C-AS1
PLA2G4C
CABP5
BSPH1
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
SNAR-C3
MIR6800
SNAR-C2
SPACA4
ELSPBP1
CARD8
SNAR-A4
SNAR-A11
PTOV1
FUT1
PLA2G4C
CGB8
DBP
C19orf73
CGB2
DKKL1
TEAD2
SIGLEC16
SNAR-A14
RCN3
SNORD35A
FLT3LG
ZNF473
SNAR-A3
PPP1R15A
CARD8-AS1
PIH1D1
MIR6798
PTOV1-AS2
SNAR-C4
BCL2L12
NTF4
SNAR-A10
GFY
MIR4751
SYNGR4
GYS1
C19orf68
CGB7
MIR4324
TULP2
SNAR-G1
CPT1C
SLC6A16
SNORD34
RRAS
PRMT1
RASIP1
TSKS
GRWD1
HSD17B14
PTH2
MIR6799
CGB1
RPL18
RUVBL2
PPFIA3
SNAR-A5
ZNF114
MIR4750
GRIN2D
CCDC114
KCNJ14
FTL
SNAR-A6
SNORD35B
SNORD32A
LOC100287477
SPHK2
AP2A1
PLA2G4C-AS1
SNAR-A8
NTN5
ADM5
IZUMO1
NUP62
SIGLEC11
KCNA7
CD37
SNAR-A2
CYTH2
LOC105372430
SNAR-A9
CCDC155
FGF21
LIN7B
AKT1S1
CA11
BAX
IRF3
NUCB1-AS1
SNAR-A13
FUZ
PRRG2
KDELR1
CABP5
BSPH1
SCAF1
FUT2
LOC105447645
SNAR-C1
TBC1D17
MIR5088
MAMSTR
VRK3
NOSIP
FAM83E
SNORD33
SNRNP70
FCGRT
HRC
LMTK3
TRPM4
SNAR-G2
PLEKHA4
SNAR-C5
CGB5
SNAR-B2
ALDH16A1
IL4I1
SNAR-A12
DHDH
ATF5
SNAR-B1
CGB3
PNKP
SULT2B1
PTOV1-AS1
SLC17A7
EMP3
RPL13A
LOC101059948
BCAT2
LOC101928295
FLJ26850
PRR12
SNAR-A7
SEC1P
SNAR-A1
MIR4749
MED25
SNAR-D
TMEM143
LIG1
NUCB1
MIR150
RPS11
LHB
|
| esv34181 | Chr.19:48009377 - 48416682 on Build GRCh38 | Loss |
ZNF114
KDELR1
CABP5
GRIN2D
CCDC114
SYNGR4
C19orf68
ELSPBP1
CARD8
EMP3
TMEM143
LIG1
PLA2G4C-AS1
PLA2G4C
CARD8-AS1
|
| nsv953596 | Chr.19:48120744 - 48134943 on Build GRCh38 | Deletion |
LIG1
|
Back To TopMore Information
Set Membership: |
Intragenic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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