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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2285053 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02727565_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Intron 23
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 NP_001080.2
AB070929.1 BAB86781.1
AB210044.1 BAE06126.1
BC140895.1
BC146866.1
BC151840.1
U78735.1 AAC50967.1
X97187.1 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LOC106660606 PRSS29P PDPK1 IFT140 LOC729652 SNRNP25 AXIN1 MIR3677 LOC105371038 LUC7L MIR6859-4 ABCA17P RNF151 MRPS34 PTX4 CCDC154 NUBP2 E4F1 HAGH SNORA10 PKD1 ZNF598 FAHD1 LOC107987233 HBM TELO2 MIR5587 NPRL3 RAB26 LOC105371049 SNORA78 SSTR5 PDIA2 UBE2I C16orf59 DNASE1L2 LOC105371045 MIR662 NDUFB10 SYNGR3 RGS11 NME4 PRR25 MRPL28 TPSB2 MIR6511B1 LOC100287175 LINC00254 MIR4717 C1QTNF8 MIR3178 CCDC78 MPG SSTR5-AS1 NOXO1 CAPN15 MSLN CRAMP1 TPSG1 MIR6768 MIR3177 HS3ST6 KCTD5 GFER ERVK13-1 CASKIN1 MAPK8IP3 NPW CHTF18 HBA1 HBQ1 RHBDL1 TPSD1 ECI1 DECR2 LOC105371184 LOC652276 EME2 MIR6767 LMF1 ABCA3 MEIOB RAB40C LOC100134368 MIR3176 SLC9A3R2 POLR3K SNORA64 LOC107984876 RPL3L SPSB3 SNORD60 DDX11L10 FAM173A SNHG19 NHLRC4 TBC1D24 UNKL TMEM8A MIR940 NTN3 RPUSD1 RPL23AP5 TBL3 MCRIP2 MIR4516 CLCN7 WDR24 WFIKKN1 BRICD5 JMJD8 LOC101929280 PRR35 PGP TMEM204 HBA2 TSR3 HN1L HBZ NME3 LOC105371046 PIGQ CEMP1 SOX8 GNPTG FLJ42627 SNHG9 ARHGDIG IGFALS MSRB1 TPSAB1 C16orf91 METTL26 CACNA1H HAGHL LOC105371047 MLST8 FAM234A LINC00235 ATP6V0C METRN RHOT2 RPS2 AMDHD2 FBXL16 WASIR2 GNG13 RHBDF1 RNPS1 CCNF MIR3180-5 STUB1 MIR1225 TRAF7 WDR90 NARFL BAIAP3 LMF1-AS1 NTHL1 PRSS27 TSC2 RAB11FIP3
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss LOC106660606 ABCA3 SYNGR3 SLC9A3R2 MIR6511B1 MIR4717 NOXO1 MIR3677 MLST8 SNORD60 E4F1 SNHG19 MIR940 GFER RNPS1 MIR3180-5 PKD1 TBL3 CASKIN1 MIR1225 ZNF598 NPW MIR4516 BRICD5 TRAF7 ECI1 PGP RAB26 LOC105371049 NTHL1 TSC2 DNASE1L2
nsv457353 Chr.16:2255538 - 2365929 on Build GRCh38 Loss LOC106660606 ABCA3 MIR940 MIR3677 RNPS1 ABCA17P MIR4717
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain CEMP1 LOC106660606 ABCA3 PDPK1 MIR6511B1 LOC729652 MIR4717 MIR3178 MIR3677 ABCA17P MLST8 SNORD60 ATP6V0C MIR6768 E4F1 AMDHD2 SNHG19 TBC1D24 MIR940 NTN3 RNPS1 CCNF MIR3180-5 PKD1 CASKIN1 MIR1225 MIR4516 BRICD5 TRAF7 ECI1 PGP RAB26 LOC652276 LOC105371049 MIR6767 TSC2 C16orf59 DNASE1L2
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion E4F1 SNHG19 LOC106660606 ABCA3 MIR940 RNPS1 CASKIN1 MIR4717 BRICD5 TRAF7 ECI1 PGP MIR3677 RAB26 MLST8 SNORD60 DNASE1L2
nsv571202 Chr.16:2278649 - 2289619 on Build GRCh38 Loss ABCA3

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