Hs02742528_cn

• Gene Symbol: PCDHB16
• Assay Reference Genome Location: Chr.5:141186060 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 57717
• Gene Name: protocadherin beta 16
• Gene Aliases: ME1, PCDH-BETA16, PCDH3X, PCDHB8a
• Location: Chr.5:141181690-141186221 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHB16	NM_020957.3	1	4371	NP_066008.2
	AB046841.1	1	4662
	AI926355.1	1	172
	CA438727.1	1	179

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2730844	Chr.5:141183869 - 141194030 on Build GRCh38	Deletion	PCDHB9 PCDHB16 PCDHB10
nsv599919	Chr.5:141182193 - 141212836 on Build GRCh38	Loss	PCDHB9 PCDHB16 PCDHB10 PCDHB12 PCDHB11
nsv5031	Chr.5:141177713 - 141202707 on Build GRCh38	Insertion	PCDHB9 PCDHB16 PCDHB8 PCDHB10 PCDHB11
nsv823266	Chr.5:141156966 - 141222863 on Build GRCh38	Gain	PCDHB9 PCDHB16 PCDHB8 PCDHB13 PCDHB7 PCDHB14 PCDHB10 PCDHB17P PCDHB12 PCDHB11
nsv1024594	Chr.5:141167591 - 141243953 on Build GRCh38	Loss	PCDHB9 PCDHB16 PCDHB8 PCDHB13 PCDHB7 PCDHB14 PCDHB10 PCDHB19P PCDHB12 PCDHB11 PCDHB18P
nsv509092	Chr.5:141155922 - 141192231 on Build GRCh38	Insertion	PCDHB9 PCDHB16 PCDHB8 PCDHB7 PCDHB17P
nsv471634	Chr.5:141106394 - 141258375 on Build GRCh38	Gain+Loss	PCDHB8 PCDHB13 PCDHB7 PCDHB5 PCDHB14 PCDHB17P PCDHB19P PCDHB12 PCDHB9 PCDHB16 PCDHB6 PCDHB4 PCDHB15 PCDHB10 PCDHB11 PCDHB18P
nsv428127	Chr.5:141016768 - 141319173 on Build GRCh38	Loss	PCDHB8 PCDHB13 PCDHB7 PCDHB5 PCDHB14 LOC101926905 PCDHB17P PCDHB19P PCDHB12 PCDHB9 SLC25A2 PCDHB16 PCDHB6 PCDHB1 PCDHB2 PCDHB4 TAF7 PCDHB15 PCDHB10 PCDHB3 PCDHB11 PCDHB18P
dgv958e201	Chr.5:141174165 - 141215536 on Build GRCh38	Deletion	PCDHB9 PCDHB16 PCDHB8 PCDHB13 PCDHB7 PCDHB10 PCDHB12 PCDHB11
nsv599908	Chr.5:141139584 - 141250122 on Build GRCh38	Loss	PCDHB8 PCDHB13 PCDHB7 PCDHB14 PCDHB17P PCDHB19P PCDHB12 PCDHB9 PCDHB16 PCDHB6 PCDHB15 PCDHB10 PCDHB11 PCDHB18P
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHGA4 PCDHA5 PCDHAC1 PCDHGA1 PCDHB14 PCDHB19P PCDHA12 PCDHB6 PCDHGB1 PCDHA6 PCDHA13 PCDHGA8 TAF7 PCDHA11 PCDHAC2 PCDHB3 PCDHGA9 PCDHB18P PCDHGB3 PCDHB7 PCDHGA6 PCDHB17P PCDHA9 PCDHGB7 PCDHB16 PCDHB4 PCDHA3 PCDHA2 PCDHB8 PCDHGB5 PCDHGA11 PCDHGB8P LOC101926905 PCDHGA12 PCDHGA7 PCDHGB2 PCDHB2 PCDHB15 PCDHA4 PCDHB10 PCDHA1 PCDHA8 PCDHB13 PCDHB5 PCDHGB6 PCDHGA3 PCDHA7 PCDHB12 PCDHGB4 PCDHGA10 PCDHB9 SLC25A2 PCDHB1 PCDHA10 PCDHGA2 PCDHB11 PCDHGA5
nsv499084	Chr.5:141175152 - 141193769 on Build GRCh38	Gain	PCDHB9 PCDHB16 PCDHB8 PCDHB7 PCDHB10
esv2664767	Chr.5:141177668 - 141213756 on Build GRCh38	Deletion	PCDHB9 PCDHB16 PCDHB8 PCDHB10 PCDHB12 PCDHB11

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

homophilic cell adhesion via plasma membrane adhesion molecules
chemical synaptic transmission
synapse assembly
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Function(s)

calcium ion binding