Hs02844682_cn

• Gene Symbol: PCDHB9
• Assay Reference Genome Location: Chr.5:141188107 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56127
• Gene Name: protocadherin beta 9
• Gene Aliases: PCDH-BETA9, PCDH3H
• Location: Chr.5:141187127-141191538 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHB9	NM_019119.4	1	981	NP_061992.3
	AB208959.1	1	547	BAD92196.1
	AF152502.2	1	789	AAD43763.2
	AF217749.1	1	789	AAF81913.1
	BC100672.1	1	789	AAI00673.1
	BC103494.1	1	788	AAI03495.1
	BC105636.1	1	789	AAI05637.1
	BC105640.1	1	789	AAI05641.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv599919	Chr.5:141182193 - 141212836 on Build GRCh38	Loss	PCDHB12 PCDHB10 PCDHB11 PCDHB16 PCDHB9
esv2730844	Chr.5:141183869 - 141194030 on Build GRCh38	Deletion	PCDHB10 PCDHB16 PCDHB9
nsv823266	Chr.5:141156966 - 141222863 on Build GRCh38	Gain	PCDHB12 PCDHB10 PCDHB8 PCDHB11 PCDHB16 PCDHB13 PCDHB9 PCDHB7 PCDHB17P PCDHB14
nsv5031	Chr.5:141177713 - 141202707 on Build GRCh38	Insertion	PCDHB10 PCDHB8 PCDHB11 PCDHB16 PCDHB9
nsv428127	Chr.5:141016768 - 141319173 on Build GRCh38	Loss	PCDHB10 PCDHB3 PCDHB15 PCDHB16 PCDHB13 PCDHB19P PCDHB6 SLC25A2 PCDHB9 PCDHB2 PCDHB17P LOC101926905 PCDHB4 PCDHB12 PCDHB8 PCDHB11 PCDHB1 PCDHB18P TAF7 PCDHB5 PCDHB7 PCDHB14
nsv471634	Chr.5:141106394 - 141258375 on Build GRCh38	Gain+Loss	PCDHB10 PCDHB15 PCDHB16 PCDHB13 PCDHB19P PCDHB6 PCDHB9 PCDHB17P PCDHB4 PCDHB12 PCDHB8 PCDHB11 PCDHB18P PCDHB5 PCDHB7 PCDHB14
nsv509092	Chr.5:141155922 - 141192231 on Build GRCh38	Insertion	PCDHB8 PCDHB16 PCDHB9 PCDHB7 PCDHB17P
nsv1031792	Chr.5:141167591 - 141196668 on Build GRCh38	Loss	PCDHB10 PCDHB8 PCDHB16 PCDHB9 PCDHB7
dgv958e201	Chr.5:141174165 - 141215536 on Build GRCh38	Deletion	PCDHB12 PCDHB10 PCDHB8 PCDHB11 PCDHB16 PCDHB13 PCDHB9 PCDHB7
nsv599908	Chr.5:141139584 - 141250122 on Build GRCh38	Loss	PCDHB10 PCDHB15 PCDHB16 PCDHB13 PCDHB19P PCDHB6 PCDHB9 PCDHB17P PCDHB12 PCDHB8 PCDHB11 PCDHB18P PCDHB7 PCDHB14
nsv964958	Chr.5:141187306 - 141189930 on Build GRCh38	Duplication	PCDHB9
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHA10 PCDHGA7 PCDHA2 PCDHB9 PCDHB2 PCDHB8 PCDHGA3 TAF7 PCDHGA5 PCDHGB6 PCDHA3 PCDHA13 PCDHGA10 PCDHA1 PCDHB6 PCDHGA8 PCDHGB2 PCDHGB5 PCDHA5 PCDHAC2 PCDHB11 PCDHB1 PCDHA12 PCDHB7 PCDHGB7 PCDHB16 PCDHB19P SLC25A2 PCDHGA9 PCDHB17P PCDHB4 PCDHB18P PCDHB5 PCDHA11 PCDHB10 PCDHB3 PCDHGA12 PCDHB15 PCDHA9 PCDHGB8P PCDHGA1 PCDHB13 PCDHGB1 PCDHGA6 PCDHAC1 PCDHGA4 PCDHGB3 LOC101926905 PCDHGA11 PCDHA4 PCDHB12 PCDHA7 PCDHA8 PCDHA6 PCDHGB4 PCDHGA2 PCDHB14
nsv499084	Chr.5:141175152 - 141193769 on Build GRCh38	Gain	PCDHB10 PCDHB8 PCDHB16 PCDHB9 PCDHB7
esv2664767	Chr.5:141177668 - 141213756 on Build GRCh38	Deletion	PCDHB12 PCDHB10 PCDHB8 PCDHB11 PCDHB16 PCDHB9

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

homophilic cell adhesion via plasma membrane adhesion molecules
chemical synaptic transmission
synapse assembly
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Function(s)

calcium ion binding