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Gene Symbol
TRIM40
Assay Reference Genome
Location

Chr.6:30136769 on build GRCh38
Cytoband
6p22.1
Assay ID Hs02868104_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 135644

Gene Name:

 tripartite motif containing 40

Gene Aliases:

 RNF35

Location:

 Chr.6:30135998-30148773 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM40 NM_001286633.1 NP_001273562.1
NM_138700.4 NP_619645.1
XM_011514305.1 2 550 XP_011512607.1
XM_011514306.1 XP_011512608.1
XM_011514308.1 2 550 XP_011512610.1
XM_011514309.1 2 550 XP_011512611.1
BC060785.1 AAH60785.1
CB990357.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion DHX16 RNF39 PSORS1C2 OR2H1 C6orf136 HLA-F-AS1 LINC01015 HLA-J MUC21 HCG18 HCG20 GNL1 TCF19 SFTA2 TRIM15 C6orf15 ATAT1 MAS1L TRIM39-RPP21 MDC1 DPCR1 HLA-A OR2H2 MIR4640 HLA-H LOC101929006 ZNRD1ASP OR10C1 PSORS1C1 MIR6891 TRIM31-AS1 PSORS1C3 ZFP57 SNORD32B CDSN HCG27 LOC105375014 TRIM39 HCG9 POU5F1 MIR877 DDR1 TRIM26 OR5V1 TUBB HLA-C HCG4 VARS2 ZNRD1 HCG8 TRIM40 HLA-G PRR3 TRIM10 OR12D3 ABCF1 CCHCR1 PPP1R11 LINC00243 GABBR1 HLA-L HLA-E HCG22 RPP21 HCG17 OR2J2 OR12D2 HLA-B TRIM31 IFITM4P NRM HLA-K HLA-F FLOT1 MRPS18B MOG IER3 HCG4B MICA PPP1R10 LOC554223 UBD OR11A1 MUC22 PPP1R18 GTF2H4 MDC1-AS1 OR14J1
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion DHX16 RNF39 PSORS1C2 OR2H1 C6orf136 HLA-F-AS1 LINC01015 HLA-J MUC21 HCG18 HCG20 GNL1 TCF19 SFTA2 LINC01623 TRIM15 C6orf15 ATAT1 MAS1L TRIM39-RPP21 MDC1 DPCR1 HLA-A OR2H2 MIR4640 HLA-H LOC101929006 ZNRD1ASP OR10C1 PSORS1C1 TRIM31-AS1 OR2W1 ZNF311 PSORS1C3 ZFP57 SNORD32B HCG16 CDSN HCG27 LOC105375014 TRIM39 HCG9 POU5F1 TRIM27 MIR877 DDR1 TRIM26 OR5V1 TUBB LINC01556 HCG4 VARS2 ZNRD1 HCG8 TRIM40 HLA-G PRR3 TRIM10 OR12D3 ABCF1 CCHCR1 PPP1R11 LINC00243 GABBR1 HLA-L HLA-E HCG22 RPP21 HCG17 OR2J2 OR12D2 LOC100129636 TRIM31 IFITM4P OR2J3 NRM LINC00533 HLA-K OR2B3 HLA-F FLOT1 MRPS18B MOG IER3 HCG4B PPP1R10 LOC554223 HCG14 UBD OR11A1 MUC22 PPP1R18 GTF2H4 MDC1-AS1 OR14J1
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion DHX16 RNF39 PSORS1C2 C6orf136 HLA-F-AS1 HLA-J MUC21 HCG18 HCG20 GNL1 TCF19 SFTA2 TRIM15 C6orf15 ATAT1 TRIM39-RPP21 MDC1 DPCR1 HLA-A MIR4640 HLA-H ZNRD1ASP PSORS1C1 TRIM31-AS1 PSORS1C3 CDSN HCG27 LOC105375014 TRIM39 HCG9 POU5F1 MIR877 DDR1 TRIM26 TUBB HLA-C HCG4 VARS2 ZNRD1 HCG8 TRIM40 HLA-G PRR3 TRIM10 ABCF1 CCHCR1 PPP1R11 LINC00243 HLA-L HLA-E HCG22 RPP21 HCG17 TRIM31 IFITM4P NRM HLA-K HLA-F FLOT1 MRPS18B IER3 HCG4B PPP1R10 LOC554223 MUC22 PPP1R18 GTF2H4 MDC1-AS1
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss DHX16 RNF39 PSORS1C2 C6orf136 HLA-J MUC21 HCG18 HCG20 GNL1 TCF19 SFTA2 TRIM15 C6orf15 ATAT1 TRIM39-RPP21 MDC1 DPCR1 HLA-A MIR4640 HLA-H ZNRD1ASP PSORS1C1 TRIM31-AS1 PSORS1C3 CDSN HCG27 LOC105375014 TRIM39 HCG9 POU5F1 MIR877 DDR1 TRIM26 TUBB HLA-C VARS2 ZNRD1 HCG8 TRIM40 PRR3 TRIM10 ABCF1 CCHCR1 PPP1R11 LINC00243 HLA-L HLA-E HCG22 RPP21 HCG17 TRIM31 NRM HLA-K FLOT1 MRPS18B IER3 HCG4B PPP1R10 MUC22 PPP1R18 GTF2H4 MDC1-AS1
esv2731777 Chr.6:29943636 - 30260756 on Build GRCh38 Deletion TRIM26 ZNRD1ASP TRIM31 RNF39 ZNRD1 HCG8 TRIM40 TRIM31-AS1 TRIM10 HLA-J PPP1R11 HLA-L TRIM15 HCG17 HCG9 HLA-A
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication DHX16 RNF39 PSORS1C2 C6orf136 HLA-J MUC21 HCG18 HCG26 HCG20 GNL1 TCF19 SFTA2 TRIM15 C6orf15 ATAT1 TRIM39-RPP21 MDC1 DPCR1 MIR4640 ZNRD1ASP PSORS1C1 MIR6891 TRIM31-AS1 PSORS1C3 CDSN HCG27 LOC105375014 TRIM39 POU5F1 MIR877 LOC102725068 DDR1 TRIM26 TUBB HLA-C VARS2 ZNRD1 HCG8 TRIM40 PRR3 TRIM10 ABCF1 CCHCR1 PPP1R11 LINC00243 HLA-L HLA-E HCG22 RPP21 HCG17 HCP5 HLA-B TRIM31 NRM FLOT1 MRPS18B IER3 MICA PPP1R10 MUC22 PPP1R18 GTF2H4 MDC1-AS1

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More Information


Additional Information:

For this assay, SNP(s) [rs116012628] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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