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Gene Symbol
TRIM40
Assay Reference Genome
Location

Chr.6:30136769 on build GRCh38
Cytoband
6p22.1
Assay ID Hs02868104_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 135644

Gene Name:

 tripartite motif containing 40

Gene Aliases:

 RNF35

Location:

 Chr.6:30135998-30148773 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM40 NM_001286633.1 NP_001273562.1
NM_138700.4 NP_619645.1
XM_011514305.1 2 550 XP_011512607.1
XM_011514306.1 XP_011512608.1
XM_011514308.1 2 550 XP_011512610.1
XM_011514309.1 2 550 XP_011512611.1
BC060785.1 AAH60785.1
CB990357.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion OR2H1 TRIM31-AS1 IER3 FLOT1 VARS2 PPP1R10 ZNRD1 OR14J1 HLA-F LINC00243 HLA-K HLA-A MICA OR2H2 POU5F1 HLA-E LOC105375014 SNORD32B ZFP57 TRIM10 GTF2H4 TRIM39 IFITM4P PSORS1C2 HCG27 HLA-J LOC554223 MIR6891 SFTA2 OR12D2 MIR4640 TCF19 OR11A1 MRPS18B LOC101929006 HCG22 MUC21 NRM OR10C1 ZNRD1ASP MUC22 TRIM31 ATAT1 CDSN TRIM40 HLA-H PPP1R18 PPP1R11 HLA-C HCG17 MDC1 HLA-G HCG4B HCG20 HLA-F-AS1 GABBR1 HLA-L ABCF1 OR2J2 LINC01015 MAS1L TRIM26 C6orf15 HCG8 TUBB PSORS1C1 OR12D3 CCHCR1 HCG4 DHX16 UBD DDR1 OR5V1 MOG RPP21 PRR3 MDC1-AS1 PSORS1C3 HCG18 C6orf136 HCG9 MIR877 TRIM15 DPCR1 HLA-B RNF39 TRIM39-RPP21 GNL1
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion OR2H1 TRIM31-AS1 IER3 FLOT1 VARS2 PPP1R10 ZNRD1 HCG14 OR14J1 HLA-F LINC00243 HLA-K HLA-A OR2H2 POU5F1 HLA-E LOC105375014 SNORD32B ZFP57 TRIM10 GTF2H4 TRIM39 IFITM4P PSORS1C2 HCG27 OR2W1 HLA-J LOC100129636 LOC554223 SFTA2 OR12D2 MIR4640 TCF19 OR2J3 LINC01556 LINC01623 OR11A1 MRPS18B LOC101929006 HCG22 MUC21 NRM OR10C1 ZNRD1ASP MUC22 HCG16 TRIM31 ATAT1 CDSN TRIM40 HLA-H PPP1R18 PPP1R11 HCG17 MDC1 HLA-G HCG4B HCG20 HLA-F-AS1 LINC00533 GABBR1 HLA-L ABCF1 OR2J2 OR2B3 LINC01015 MAS1L TRIM26 C6orf15 ZNF311 HCG8 TUBB PSORS1C1 OR12D3 CCHCR1 HCG4 DHX16 UBD DDR1 OR5V1 MOG RPP21 PRR3 MDC1-AS1 PSORS1C3 HCG18 C6orf136 HCG9 MIR877 TRIM15 DPCR1 RNF39 TRIM27 TRIM39-RPP21 GNL1
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion TRIM31-AS1 IER3 FLOT1 VARS2 PPP1R10 ZNRD1 HLA-F LINC00243 HLA-K HLA-A POU5F1 HLA-E LOC105375014 TRIM10 GTF2H4 TRIM39 IFITM4P PSORS1C2 HCG27 HLA-J LOC554223 SFTA2 MIR4640 TCF19 MRPS18B HCG22 MUC21 NRM ZNRD1ASP MUC22 TRIM31 ATAT1 CDSN TRIM40 HLA-H PPP1R18 PPP1R11 HLA-C HCG17 MDC1 HLA-G HCG4B HCG20 HLA-F-AS1 HLA-L ABCF1 TRIM26 C6orf15 HCG8 TUBB PSORS1C1 CCHCR1 HCG4 DHX16 DDR1 RPP21 PRR3 MDC1-AS1 PSORS1C3 HCG18 C6orf136 HCG9 MIR877 TRIM15 DPCR1 RNF39 TRIM39-RPP21 GNL1
esv2731777 Chr.6:29943636 - 30260756 on Build GRCh38 Deletion TRIM40 TRIM26 HLA-J TRIM31-AS1 HCG8 PPP1R11 HCG17 ZNRD1 HLA-A HCG9 TRIM10 TRIM15 HLA-L ZNRD1ASP RNF39 TRIM31
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss TRIM31-AS1 IER3 FLOT1 VARS2 PPP1R10 ZNRD1 LINC00243 HLA-K HLA-A POU5F1 HLA-E LOC105375014 TRIM10 GTF2H4 TRIM39 PSORS1C2 HCG27 HLA-J SFTA2 MIR4640 TCF19 MRPS18B HCG22 MUC21 NRM ZNRD1ASP MUC22 TRIM31 ATAT1 CDSN TRIM40 HLA-H PPP1R18 PPP1R11 HLA-C HCG17 MDC1 HCG4B HCG20 HLA-L ABCF1 TRIM26 C6orf15 HCG8 TUBB PSORS1C1 CCHCR1 DHX16 DDR1 RPP21 PRR3 MDC1-AS1 PSORS1C3 HCG18 C6orf136 HCG9 MIR877 TRIM15 DPCR1 RNF39 TRIM39-RPP21 GNL1
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication TRIM31-AS1 IER3 FLOT1 VARS2 PPP1R10 ZNRD1 LINC00243 MICA POU5F1 HLA-E LOC105375014 TRIM10 GTF2H4 TRIM39 PSORS1C2 HCG27 HLA-J HCP5 MIR6891 SFTA2 MIR4640 TCF19 MRPS18B HCG22 MUC21 NRM ZNRD1ASP MUC22 HCG26 TRIM31 ATAT1 CDSN TRIM40 PPP1R18 PPP1R11 HLA-C HCG17 MDC1 HCG20 HLA-L ABCF1 TRIM26 C6orf15 HCG8 TUBB PSORS1C1 CCHCR1 DHX16 DDR1 LOC102725068 RPP21 PRR3 MDC1-AS1 PSORS1C3 HCG18 C6orf136 MIR877 TRIM15 DPCR1 HLA-B RNF39 TRIM39-RPP21 GNL1

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More Information


Additional Information:

For this assay, SNP(s) [rs116012628] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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