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See other SCAMP4 CNV Assays ›
Gene Symbol
SCAMP4
Assay Reference Genome
Location

Chr.19:1918162 on build GRCh38
Cytoband
19p13.3
Assay ID Hs02871271_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 113178

Gene Name:

 secretory carrier membrane protein 4

Gene Aliases:

 SCAMP-4

Location:

 Chr.19:1905374-1926013 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 3 - Exon 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SCAMP4 NM_079834.2 NP_524558.1
AK074586.1 BAC11075.1
AK074967.1 BAC11322.1
AK092056.1 BAC03797.1
AK307641.1
AK307700.1
AL832731.1
BC011747.2 AAH11747.1
BC016509.1 AAH16509.1
BC062598.1 AAH62598.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv3893156 Chr.19:1766738 - 2115791 on Build GRCh38 Loss MIR1909 MOB3A SCAMP4 KLF16 MKNK2 REXO1 ATP8B3 BTBD2 ADAT3 CSNK1G2-AS1 ABHD17A IZUMO4 LOC100288123 ONECUT3 CSNK1G2 AP3D1
esv32942 Chr.19:1320268 - 1999205 on Build GRCh38 Gain+Loss MUM1 MIR1909 SCAMP4 PLK5 MEX3D ATP8B3 RPS15 BTBD2 MBD3 ADAT3 CSNK1G2-AS1 ABHD17A GAMT LOC100288123 PCSK4 CSNK1G2 DAZAP1 TCF3 KLF16 REEP6 REXO1 C19orf25 UQCR11 NDUFS7 ADAMTSL5 APC2 ONECUT3
nsv470107 Chr.19:1782799 - 2100347 on Build GRCh38 Loss MIR1909 MOB3A SCAMP4 KLF16 MKNK2 REXO1 ATP8B3 BTBD2 ADAT3 CSNK1G2-AS1 ABHD17A IZUMO4 LOC100288123 CSNK1G2
nsv953942 Chr.19:1371602 - 2057401 on Build GRCh38 Deletion MUM1 MIR1909 SCAMP4 MKNK2 PLK5 MEX3D ATP8B3 RPS15 BTBD2 MBD3 ADAT3 CSNK1G2-AS1 ABHD17A GAMT LOC100288123 PCSK4 CSNK1G2 DAZAP1 TCF3 KLF16 REEP6 REXO1 C19orf25 UQCR11 NDUFS7 ADAMTSL5 APC2 ONECUT3
nsv1160561 Chr.19:1884553 - 2003982 on Build GRCh38 Deletion ADAT3 CSNK1G2-AS1 SCAMP4 ABHD17A BTBD2 CSNK1G2

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More Information


Additional Information:

For this assay, SNP(s) [rs116594971] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

transfer/carrier protein

Gene Ontology Categories:

Function(s)


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