Hs02877721_cn

• Gene Symbol: PCDHB16
• Assay Reference Genome Location: Chr.5:141184929 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 57717
• Gene Name: protocadherin beta 16
• Gene Aliases: ME1, PCDH-BETA16, PCDH3X, PCDHB8a
• Location: Chr.5:141181690-141186221 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHB16	NM_020957.3	1	3240	NP_066008.2
	AB046841.1	1	3531
	AF217757.1	1	2370	AAF81914.1
	AK056460.1	1	2545
	AY013878.1			AAK21988.1
	BC036062.1	1	2519	AAH36062.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv599919	Chr.5:141182193 - 141212836 on Build GRCh38	Loss	PCDHB12 PCDHB11 PCDHB16 PCDHB9 PCDHB10
esv2730844	Chr.5:141183869 - 141194030 on Build GRCh38	Deletion	PCDHB16 PCDHB9 PCDHB10
nsv964957	Chr.5:141184495 - 141185095 on Build GRCh38	Duplication	PCDHB16
nsv823266	Chr.5:141156966 - 141222863 on Build GRCh38	Gain	PCDHB12 PCDHB14 PCDHB11 PCDHB16 PCDHB9 PCDHB7 PCDHB10 PCDHB8 PCDHB17P PCDHB13
nsv5031	Chr.5:141177713 - 141202707 on Build GRCh38	Insertion	PCDHB11 PCDHB16 PCDHB9 PCDHB10 PCDHB8
nsv428127	Chr.5:141016768 - 141319173 on Build GRCh38	Loss	PCDHB12 PCDHB14 SLC25A2 PCDHB1 PCDHB11 PCDHB16 TAF7 PCDHB9 PCDHB7 PCDHB8 PCDHB19P PCDHB6 PCDHB4 PCDHB18P PCDHB5 PCDHB2 LOC101926905 PCDHB15 PCDHB10 PCDHB17P PCDHB13 PCDHB3
nsv471634	Chr.5:141106394 - 141258375 on Build GRCh38	Gain+Loss	PCDHB12 PCDHB14 PCDHB11 PCDHB16 PCDHB9 PCDHB7 PCDHB8 PCDHB19P PCDHB6 PCDHB4 PCDHB18P PCDHB5 PCDHB15 PCDHB10 PCDHB17P PCDHB13
nsv509092	Chr.5:141155922 - 141192231 on Build GRCh38	Insertion	PCDHB16 PCDHB9 PCDHB7 PCDHB8 PCDHB17P
nsv1031792	Chr.5:141167591 - 141196668 on Build GRCh38	Loss	PCDHB16 PCDHB9 PCDHB7 PCDHB10 PCDHB8
dgv958e201	Chr.5:141174165 - 141215536 on Build GRCh38	Deletion	PCDHB12 PCDHB11 PCDHB16 PCDHB9 PCDHB7 PCDHB10 PCDHB8 PCDHB13
nsv599908	Chr.5:141139584 - 141250122 on Build GRCh38	Loss	PCDHB12 PCDHB14 PCDHB11 PCDHB16 PCDHB9 PCDHB7 PCDHB8 PCDHB19P PCDHB6 PCDHB18P PCDHB15 PCDHB10 PCDHB17P PCDHB13
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHB12 PCDHGB7 SLC25A2 PCDHB11 PCDHA9 PCDHGB6 PCDHB7 PCDHB4 PCDHB14 PCDHGA2 PCDHA12 PCDHB16 PCDHA7 PCDHGB5 PCDHB6 PCDHA2 PCDHB2 PCDHA6 LOC101926905 PCDHGB2 PCDHA4 PCDHB13 PCDHGB8P PCDHA1 PCDHA13 PCDHB9 PCDHB8 PCDHB19P PCDHGA12 PCDHGB1 PCDHGA3 PCDHA8 PCDHA3 PCDHB18P PCDHGB3 PCDHGA5 PCDHA5 PCDHB15 PCDHB10 PCDHB17P PCDHGA9 PCDHGA1 PCDHGA10 PCDHGB4 PCDHB1 TAF7 PCDHGA7 PCDHAC2 PCDHA11 PCDHGA8 PCDHB5 PCDHGA11 PCDHA10 PCDHGA6 PCDHB3 PCDHGA4 PCDHAC1
nsv499084	Chr.5:141175152 - 141193769 on Build GRCh38	Gain	PCDHB16 PCDHB9 PCDHB7 PCDHB10 PCDHB8
esv2664767	Chr.5:141177668 - 141213756 on Build GRCh38	Deletion	PCDHB12 PCDHB11 PCDHB16 PCDHB9 PCDHB10 PCDHB8

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

homophilic cell adhesion via plasma membrane adhesion molecules
chemical synaptic transmission
synapse assembly
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Function(s)

calcium ion binding