Hs02878619_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140853300 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_014005.4	1	5529	NP_054724.1
	NM_031857.1			NP_114063.1
	AB002343.1	1	5529
	AF152317.1			AAD43711.1
	AJ007610.1			CAC22257.1
	AK314303.1
	BC104802.1			AAI04803.1
	BC104804.1			AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA9 PCDHA7 PCDHA4
esv2421858	Chr.5:140844251 - 140857963 on Build GRCh38	Deletion	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA9 PCDHA7 PCDHA4
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA9 PCDHA7 PCDHA4
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA9 PCDHA7 PCDHA4
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA9 PCDHA7 PCDHA4
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA9 PCDHA7 PCDHA4
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA9 PCDHA7 PCDHA4
esv26168	Chr.5:140842564 - 140859300 on Build GRCh38	Gain	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA9 PCDHA7 PCDHA4
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA9 PCDHA7 PCDHA4
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA9 PCDHA7 PCDHA4
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA9 PCDHA7 PCDHA4
dgv10101n54	Chr.5:140851652 - 140856743 on Build GRCh38	Loss	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA9 PCDHA7 PCDHA4
nsv1135376	Chr.5:140849315 - 140859915 on Build GRCh38	Deletion	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA9 PCDHA7 PCDHA4
esv2657537	Chr.5:140850410 - 140855957 on Build GRCh38	Deletion	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA9 PCDHA7 PCDHA4
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHB6 PCDHGA8 SLC25A2 PCDHA1 PCDHGB5 PCDHAC2 PCDHB15 PCDHB12 LOC101926905 PCDHGA1 PCDHGA6 PCDHA13 PCDHA10 PCDHGA10 PCDHB17P PCDHGB6 PCDHB4 PCDHB11 PCDHGA7 PCDHB8 PCDHA11 PCDHGB7 PCDHGA3 PCDHGB3 PCDHGA12 PCDHAC1 PCDHGB8P PCDHGA5 PCDHGA11 PCDHA9 PCDHB3 PCDHB16 PCDHB1 PCDHB9 PCDHGB4 PCDHGA9 PCDHA8 PCDHB14 PCDHGB2 PCDHA3 PCDHB13 PCDHA5 PCDHA6 PCDHB5 PCDHB2 PCDHB10 PCDHB7 PCDHGA2 PCDHB18P PCDHA12 PCDHA7 PCDHA4 PCDHB19P PCDHA2 PCDHGA4 PCDHGB1 TAF7
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	VTRNA1-1 PCDHA1 PCDHA11 ZMAT2 HARS PCDHA7 PCDHA4 PCDHA8 PCDHA3 PCDHA2 VTRNA1-3 PCDHA5 PCDHA6 VTRNA1-2 PCDHA10 PCDHA9 HARS2
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA9 PCDHA7 PCDHA4
dgv1652e212	Chr.5:140839141 - 140864158 on Build GRCh38	Loss	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA9 PCDHA7 PCDHA4
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA11 PCDHA9 PCDHA7 PCDHA4
dgv10097n54	Chr.5:140849850 - 140856743 on Build GRCh38	Loss	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA9 PCDHA7 PCDHA4
esv3890744	Chr.5:140846323 - 140857963 on Build GRCh38	Loss	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA9 PCDHA7 PCDHA4
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA9 PCDHA7 PCDHA4
nsv599894	Chr.5:140852761 - 140864165 on Build GRCh38	Loss	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA9 PCDHA7 PCDHA4
dgv10098n54	Chr.5:140850785 - 140856743 on Build GRCh38	Loss	PCDHA8 PCDHA3 PCDHA2 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA9 PCDHA7 PCDHA4

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding