Hs02878619_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140853300 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_014005.4	1	5529	NP_054724.1
	NM_031857.1			NP_114063.1
	AB002343.1	1	5529
	AF152317.1			AAD43711.1
	AJ007610.1			CAC22257.1
	AK314303.1
	BC104802.1			AAI04803.1
	BC104804.1			AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3 PCDHA1
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3 PCDHA1
nsv442962	Chr.5:140844251 - 140864171 on Build GRCh38	Loss	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3 PCDHA1
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3 PCDHA1
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3 PCDHA1
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3 PCDHA1
dgv971n67	Chr.5:140842564 - 140859431 on Build GRCh38	Loss	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3 PCDHA1
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3 PCDHA1
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3 PCDHA1
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3 PCDHA1
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3 PCDHA1
nsv599870	Chr.5:140851652 - 140853802 on Build GRCh38	Loss	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA6 PCDHA7 PCDHA8 PCDHA3 PCDHA1
nsv1135376	Chr.5:140849315 - 140859915 on Build GRCh38	Deletion	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3 PCDHA1
esv2657537	Chr.5:140850410 - 140855957 on Build GRCh38	Deletion	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3 PCDHA1
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHB7 PCDHGA10 PCDHB15 PCDHB10 PCDHGA6 PCDHB12 PCDHA4 PCDHB16 PCDHB9 PCDHB3 PCDHGA12 PCDHB11 PCDHB14 PCDHA10 PCDHGA7 PCDHB17P PCDHA13 PCDHB2 PCDHGA9 PCDHGB1 PCDHB6 PCDHGA3 PCDHB4 PCDHB1 PCDHGA4 PCDHGB3 PCDHB19P PCDHA12 PCDHGA8 TAF7 PCDHGB8P PCDHB13 PCDHGB2 PCDHAC2 PCDHA1 PCDHB8 PCDHGA1 PCDHGA2 PCDHGB6 PCDHGA5 PCDHA6 PCDHGB7 PCDHA8 PCDHA3 PCDHB5 PCDHA9 PCDHGA11 PCDHB18P PCDHA11 SLC25A2 PCDHA2 PCDHAC1 PCDHGB4 PCDHA5 LOC101926905 PCDHA7 PCDHGB5
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	VTRNA1-3 PCDHA9 HARS2 PCDHA4 PCDHA11 PCDHA1 VTRNA1-1 PCDHA2 HARS VTRNA1-2 PCDHA5 ZMAT2 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA11 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3 PCDHA1
dgv1653e212	Chr.5:140839141 - 140874132 on Build GRCh38	Loss	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA11 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3 PCDHA1
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3 PCDHA1
dgv10097n54	Chr.5:140849850 - 140856743 on Build GRCh38	Loss	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3 PCDHA1
dgv10094n54	Chr.5:140846323 - 140860465 on Build GRCh38	Loss	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3 PCDHA1
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3 PCDHA1
dgv10099n54	Chr.5:140850785 - 140859109 on Build GRCh38	Loss	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3 PCDHA1
dgv10103n54	Chr.5:140852761 - 140855953 on Build GRCh38	Loss	PCDHA2 PCDHA9 PCDHA5 PCDHA4 PCDHA6 PCDHA7 PCDHA10 PCDHA8 PCDHA3 PCDHA1

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding