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See other LOC105371049 CNV Assays ›
Gene Symbol
LOC105371049
Assay Reference Genome
Location

Chr.16:2093969 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02890595_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 105371049

Gene Name:

 uncharacterized LOC105371049

Gene Aliases:

 -

Location:

 Chr.16:2091436-2095017 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LOC105371049 NR_135175.1
BM824397.1

Target Gene Details

Entrez Gene ID:

 5310

Gene Name:

 polycystin 1, transient receptor potential channel interacting

Gene Aliases:

 PBP, Pc-1, TRPP1

Location:

 Chr.16:2088708-2135898 on Build GRCh38

Assay Gene Location:

 Within Exon 41
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PKD1 NM_000296.3 36 10869 NP_000287.3
NM_001009944.2 36 10872 NP_001009944.2
XM_005255370.3 26 8459 XP_005255427.1
XM_011522528.2 37 10897 XP_011520830.1
XM_011522529.2 37 10895 XP_011520831.1
XM_011522530.2 37 10702 XP_011520832.1
XM_011522532.2 36 10630 XP_011520834.1
XM_011522534.2 37 10687 XP_011520836.1
XM_011522535.2 28 8919 XP_011520837.1
XM_011522537.2 26 7830 XP_011520839.1
XM_017023285.1 27 8474 XP_016878774.1
AB209025.1 23 5226 BAD92262.1
AB209675.1 22 6178 BAD92912.1
L33243.1 36 10871 AAC37576.1
U24497.1 36 10798 AAC50128.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4862n54 Chr.16:2088868 - 2095128 on Build GRCh38 Loss PKD1 MIR1225 LOC105371049
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication CRAMP1 METTL26 CASKIN1 WDR90 MLST8 MIR4516 LOC107984876 NARFL DNASE1L2 RGS11 LOC100287175 MRPS34 SPSB3 TPSAB1 MIR3177 AMDHD2 DECR2 MSRB1 PIGQ GNG13 LMF1 TELO2 JMJD8 HS3ST6 MIR6511B1 SSTR5-AS1 MIR940 TSR3 POLR3K MEIOB NTN3 ECI1 TBC1D24 PGP LOC729652 RHBDL1 MIR3180-5 KCTD5 RPS2 UBE2I HBA2 BAIAP3 NTHL1 NPW TPSB2 DDX11L10 PRR25 LOC105371038 RNPS1 PRSS27 RPL3L LOC107987233 C1QTNF8 NME4 RAB11FIP3 SSTR5 MIR4717 CEMP1 HBM LOC100134368 MAPK8IP3 RAB40C ZNF598 AXIN1 CCDC78 RPL23AP5 LOC105371049 TRAF7 MIR3677 TMEM8A MIR5587 HAGH ABCA17P MIR1225 NHLRC4 C16orf91 HBQ1 FAM234A NUBP2 SNHG9 ARHGDIG METRN LOC652276 RNF151 LOC105371045 FBXL16 MPG TMEM204 SNHG19 MCRIP2 CAPN15 LINC00235 CCNF STUB1 SLC9A3R2 MIR662 GNPTG PDIA2 WASIR2 LMF1-AS1 IFT140 RAB26 FLJ42627 RPUSD1 HBA1 MRPL28 MIR6859-4 ABCA3 WFIKKN1 ATP6V0C NOXO1 IGFALS SNORD60 PKD1 LOC106660606 FAM173A SNORA78 NME3 FAHD1 PRR35 HBZ MSLN E4F1 UNKL HAGHL MIR6767 MIR3178 MIR6768 WDR24 PDPK1 TSC2 SNORA64 LINC00254 C16orf59 CACNA1H TPSD1 SOX8 LOC105371047 RHOT2 EME2 SNORA10 PRSS29P CCDC154 CLCN7 NPRL3 LOC101929280 RHBDF1 ERVK13-1 HN1L SYNGR3 BRICD5 TBL3 TPSG1 LUC7L PTX4 NDUFB10 CHTF18 LOC105371046 SNRNP25 GFER MIR3176 LOC105371184
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss NTHL1 NPW SNHG19 TSC2 RNPS1 CASKIN1 SLC9A3R2 MLST8 MIR4516 DNASE1L2 RAB26 ZNF598 LOC105371049 TRAF7 MIR6511B1 ECI1 MIR1225 SYNGR3 NOXO1 SNORD60 BRICD5 PGP PKD1 TBL3 MIR3180-5 E4F1 GFER
nsv952901 Chr.16:1888800 - 2135899 on Build GRCh38 Deletion NTHL1 NPW HS3ST6 MIR6511B1 TSC2 SNORA64 RPL3L MIR1225 SYNGR3 SLC9A3R2 NOXO1 PKD1 SNORA10 TBL3 MIR4516 SNORA78 SNHG9 MSRB1 ZNF598 NDUFB10 RPS2 GFER LOC105371049 RNF151
nsv1160329 Chr.16:1961727 - 2128574 on Build GRCh38 Deletion NTHL1 NPW MIR6511B1 TSC2 SNORA64 MIR1225 SYNGR3 SLC9A3R2 NOXO1 PKD1 SNORA10 TBL3 SNORA78 SNHG9 ZNF598 NDUFB10 RPS2 GFER LOC105371049 RNF151
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss TRAF7 SNHG19 MIR6511B1 TSC2 ECI1 MIR1225 CASKIN1 SNORD60 BRICD5 PGP PKD1 MLST8 MIR4516 DNASE1L2 MIR3180-5 RAB26 E4F1 LOC105371049
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss PKD1 TRAF7 MIR4516 MIR3180-5 SNHG19 MIR6511B1 RAB26 TSC2 MIR1225 CASKIN1 LOC105371049 SNORD60
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR6767 MIR3178 SNHG19 MIR6768 PDPK1 TSC2 C16orf59 RNPS1 CCNF CASKIN1 MLST8 MIR4516 MIR4717 DNASE1L2 CEMP1 RAB26 AMDHD2 LOC105371049 TRAF7 MIR3677 MIR6511B1 MIR940 NTN3 ECI1 ABCA17P MIR1225 TBC1D24 ABCA3 ATP6V0C SNORD60 BRICD5 PGP LOC729652 PKD1 LOC106660606 MIR3180-5 E4F1 LOC652276
nsv471381 Chr.16:2088710 - 2135898 on Build GRCh38 Gain PKD1 MIR4516 MIR6511B1 TSC2 MIR1225 LOC105371049
esv26918 Chr.16:2091142 - 2123135 on Build GRCh38 Gain+Loss PKD1 MIR6511B1 LOC105371049

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More Information


Set Membership:

 Intragenic Exonic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

ion channel

Gene Ontology Categories:

Function(s) Process(es)


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