Genomic Map
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Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SCAF1 | NM_021228.2 | 7 | 3069 | NP_067051.2 |
| XM_005259122.4 | 7 | 3352 | XP_005259179.1 | |
| XM_011527194.2 | 7 | 2994 | XP_011525496.1 | |
| XM_017027083.1 | 4 | 2796 | XP_016882572.1 | |
| AK024444.1 | 7 | 3069 | ||
| BC011662.2 | AAH11662.2 | |||
| BC018398.1 | 1 | 460 | AAH18398.1 | |
| BC053992.1 | 6 | 2956 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss |
 ADM5
CPT1C
PRR12
MIR5088
BCL2L12
PRRG2
IRF3
PRMT1
NOSIP
RRAS
SCAF1
|
| nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss |
ADM5
CPT1C
PRR12
MIR5088
BCL2L12
PRRG2
IRF3
PRMT1
NOSIP
RRAS
SCAF1
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
SNAR-B1
LOC105447645
RCN3
SPHK2
SYNGR4
BCL2L12
LOC105372430
FUT2
FCGRT
PIH1D1
CA11
MIR4751
C19orf73
IZUMO1
CGB5
SNAR-A3
CGB3
SNAR-B2
RUVBL2
GFY
CYTH2
C19orf68
SNAR-D
IRF3
FUT1
SNORD32A
NUP62
FGF21
GRWD1
ELSPBP1
SNRNP70
GRIN2D
PLA2G4C-AS1
MIR6798
EMP3
MIR6799
MIR4749
SNAR-G1
SNAR-A10
TEAD2
PTOV1-AS1
CGB2
FUZ
SNORD35A
CD37
CABP5
SNAR-C4
MIR5088
PTOV1
SLC6A16
SPACA4
SNAR-C5
FAM83E
ADM5
LIG1
PRR12
CARD8-AS1
DBP
CCDC155
FLJ26850
LOC101059948
PRMT1
LIN7B
IL4I1
AKT1S1
SNAR-A11
CPT1C
DHDH
ZNF473
BSPH1
SNAR-A5
HRC
PLA2G4C
BAX
PPFIA3
VRK3
LMTK3
SNAR-A14
KCNA7
MAMSTR
CGB8
SIGLEC16
ATF5
LHB
CGB1
SNAR-A13
FTL
SNAR-A6
SNAR-A1
PTH2
TMEM143
SNAR-A7
NTN5
SNAR-C2
CGB7
LOC101928295
SNAR-A8
SNAR-A2
LOC100287477
SNORD33
SNORD35B
MED25
RPL18
NTF4
RASIP1
NOSIP
PTOV1-AS2
NUCB1-AS1
HSD17B14
AP2A1
SCAF1
MIR150
TRPM4
SNORD34
SNAR-A12
SNAR-G2
SEC1P
FLT3LG
SIGLEC11
DKKL1
SULT2B1
NUCB1
TULP2
MIR4750
TSKS
PPP1R15A
ZNF114
KDELR1
PNKP
GYS1
PLEKHA4
RPS11
CCDC114
SNAR-A9
PRRG2
SNAR-C1
CARD8
BCAT2
SNAR-A4
MIR6800
TBC1D17
RPL13A
RRAS
MIR4324
SNAR-C3
ALDH16A1
SLC17A7
KCNJ14
|
| nsv817854 | Chr.19:49618821 - 49726387 on Build GRCh38 | Gain |
ADM5
CPT1C
PRR12
MIR5088
BCL2L12
IRF3
PRMT1
RRAS
SCAF1
|
| nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss |
IRF3
SCAF1
|
| nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion |
PTOV1-AS1
BCL2L12
MIR4750
ATF5
FUZ
TSKS
MIR4751
MIR5088
PNKP
PTOV1
ADM5
PRR12
MED25
PRRG2
IRF3
PRMT1
IL4I1
NUP62
NOSIP
PTOV1-AS2
AP2A1
AKT1S1
SCAF1
CPT1C
MIR6800
MIR6799
TBC1D17
MIR4749
RRAS
|
| nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain |
ADM5
CPT1C
PRR12
MIR5088
BCL2L12
PRRG2
IRF3
PRMT1
NOSIP
RRAS
SCAF1
|
| nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion |
PTOV1-AS1
RCN3
BCL2L12
FCGRT
FUZ
SNORD35A
TSKS
MIR5088
RPS11
ADM5
PRR12
SNORD33
SNORD35B
MED25
PRRG2
IRF3
PRMT1
SNORD32A
NOSIP
AP2A1
SCAF1
CPT1C
MIR150
MIR6800
SNORD34
MIR6799
RPL13A
RRAS
|
| nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss |
PRR12
BCL2L12
PRRG2
IRF3
PRMT1
NOSIP
RRAS
SCAF1
|
| nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss |
IRF3
SCAF1
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Molecular Function -
RNA metabolism protein
RNA processing factor
RNA splicing factor
nucleic acid metabolism protein
Gene Ontology Categories:
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