Genomic Map
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Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SCAF1 | NM_021228.2 | 7 | 3069 | NP_067051.2 |
| XM_005259122.4 | 7 | 3352 | XP_005259179.1 | |
| XM_011527194.2 | 7 | 2994 | XP_011525496.1 | |
| XM_017027083.1 | 4 | 2796 | XP_016882572.1 | |
| AK024444.1 | 7 | 3069 | ||
| BC011662.2 | AAH11662.2 | |||
| BC018398.1 | 1 | 460 | AAH18398.1 | |
| BC053992.1 | 6 | 2956 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss |
 BCL2L12
ADM5
RRAS
NOSIP
PRRG2
CPT1C
PRR12
PRMT1
SCAF1
IRF3
MIR5088
|
| nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss |
BCL2L12
ADM5
RRAS
NOSIP
PRRG2
CPT1C
PRR12
PRMT1
SCAF1
IRF3
MIR5088
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
TEAD2
TMEM143
ZNF114
TULP2
CD37
DBP
PIH1D1
LHB
NTF4
RASIP1
MIR6799
PLEKHA4
MIR4324
CGB7
IZUMO1
SNAR-G1
SNAR-C1
ADM5
CGB1
LOC101928295
RPL18
CYTH2
FTL
SNAR-D
FUT2
MIR5088
BAX
HRC
CARD8
SNORD32A
CPT1C
SNAR-A12
ZNF473
TRPM4
SNAR-A5
HSD17B14
SNORD35A
PTOV1-AS1
CGB3
SNORD35B
SNAR-C3
RUVBL2
SNAR-A6
SNAR-A10
FUT1
PLA2G4C-AS1
RCN3
SIGLEC16
CGB5
ALDH16A1
NUCB1-AS1
PPP1R15A
CCDC155
SNAR-A7
MIR4749
IL4I1
GRIN2D
LIG1
FAM83E
BSPH1
PTOV1-AS2
MIR4750
SNORD33
GRWD1
VRK3
SNAR-A13
SNAR-B2
LOC100287477
MIR150
CGB8
CCDC114
SLC6A16
LIN7B
PRRG2
SEC1P
SNAR-A1
FGF21
SCAF1
NUP62
FLT3LG
SNAR-A11
KCNA7
LOC105447645
SPHK2
SNRNP70
MAMSTR
LMTK3
SNAR-A2
IRF3
NUCB1
SNAR-A9
KDELR1
LOC105372430
CGB2
SNAR-A8
SNAR-C4
ATF5
MIR6798
SNAR-A3
GYS1
RPS11
GFY
PTOV1
SNAR-C5
KCNJ14
SNAR-A14
SPACA4
BCAT2
PRR12
SNAR-A4
PRMT1
EMP3
BCL2L12
PLA2G4C
NTN5
SNORD34
CABP5
LOC101059948
SNAR-B1
MED25
AP2A1
MIR4751
C19orf73
DKKL1
C19orf68
NOSIP
DHDH
TBC1D17
SNAR-G2
FCGRT
RRAS
SLC17A7
FUZ
PTH2
CA11
AKT1S1
SNAR-C2
RPL13A
ELSPBP1
TSKS
FLJ26850
SIGLEC11
SYNGR4
SULT2B1
PPFIA3
PNKP
MIR6800
CARD8-AS1
|
| nsv470150 | Chr.19:49618821 - 49856789 on Build GRCh38 | Gain |
ADM5
RRAS
FUZ
PTOV1-AS1
MED25
AP2A1
PRR12
PRMT1
IRF3
MIR5088
BCL2L12
MIR6799
TSKS
MIR4749
CPT1C
MIR6800
SCAF1
PTOV1-AS2
PTOV1
|
| nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain |
BCL2L12
ADM5
RRAS
NOSIP
PRRG2
CPT1C
PRR12
PRMT1
SCAF1
IRF3
MIR5088
|
| nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion |
PTOV1-AS1
MED25
AP2A1
MIR4751
IRF3
MIR6799
NOSIP
MIR4749
ATF5
IL4I1
TBC1D17
PTOV1-AS2
PTOV1
MIR4750
ADM5
RRAS
FUZ
AKT1S1
PRR12
PRMT1
MIR5088
BCL2L12
TSKS
PRRG2
CPT1C
PNKP
MIR6800
SCAF1
NUP62
|
| nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss |
SCAF1
IRF3
|
| nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion |
SNORD34
SNORD35A
PTOV1-AS1
SNORD35B
MED25
AP2A1
IRF3
MIR6799
RCN3
NOSIP
RPS11
FCGRT
SNORD33
ADM5
RRAS
FUZ
RPL13A
PRR12
PRMT1
MIR150
MIR5088
BCL2L12
TSKS
PRRG2
SNORD32A
CPT1C
MIR6800
SCAF1
|
| nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss |
BCL2L12
RRAS
NOSIP
PRRG2
PRR12
PRMT1
SCAF1
IRF3
|
| nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss |
SCAF1
IRF3
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Molecular Function -
RNA metabolism protein
RNA processing factor
RNA splicing factor
nucleic acid metabolism protein
Gene Ontology Categories:
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