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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2276470 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02939689_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Exon 33
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 33 6031 NP_001080.2
AB210044.1 32 5857 BAE06126.1
BC140895.1 30 5356
BC146866.1 30 5356
BC151840.1 33 6013
U78735.1 33 5878 AAC50967.1
X97187.1 32 5666 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication SLC9A3R2 TELO2 PGP RPUSD1 RHBDL1 MIR3176 GNG13 CACNA1H SNORA64 LOC106660606 MIR3180-5 NPW MSRB1 MIR3177 ERVK13-1 LOC107984876 AMDHD2 C16orf59 HAGH MIR1225 JMJD8 LOC105371184 TBC1D24 IGFALS NME3 MIR6768 ABCA3 DDX11L10 PTX4 MIR6511B1 HBM PKD1 FAM173A LOC652276 RAB26 POLR3K MIR5587 NTN3 NPRL3 NME4 NHLRC4 MIR4516 PRSS27 LOC105371049 TPSG1 WASIR2 LOC105371046 RGS11 NARFL SNORA10 RPL23AP5 FBXL16 SNRNP25 STUB1 LOC107987233 METTL26 WFIKKN1 ATP6V0C MAPK8IP3 CEMP1 HAGHL METRN UBE2I SNORD60 LINC00254 PRR35 KCTD5 SOX8 TPSD1 FAHD1 MIR3178 MIR6859-4 MRPL28 CLCN7 LOC100134368 HN1L LMF1-AS1 MRPS34 GNPTG CCDC154 IFT140 TSR3 CASKIN1 MIR662 PRSS29P CRAMP1 MCRIP2 MPG PRR25 TPSB2 HBZ PDIA2 AXIN1 TBL3 CCNF BAIAP3 RAB40C MEIOB SNHG9 CHTF18 ABCA17P DNASE1L2 MIR3677 SSTR5 UNKL ZNF598 TMEM8A NOXO1 SYNGR3 RNF151 FLJ42627 HBA2 MLST8 LOC105371045 FAM234A HBA1 PIGQ RPL3L TRAF7 CAPN15 MIR6767 DECR2 C1QTNF8 C16orf91 RHBDF1 NDUFB10 LUC7L NUBP2 SNORA78 RHOT2 RNPS1 WDR90 LOC101929280 ARHGDIG TSC2 TPSAB1 LMF1 LOC729652 SPSB3 CCDC78 MSLN LOC105371038 RPS2 WDR24 PDPK1 MIR4717 LOC105371047 SNHG19 EME2 BRICD5 MIR940 HBQ1 LINC00235 GFER NTHL1 ECI1 SSTR5-AS1 HS3ST6 RAB11FIP3 TMEM204 LOC100287175 E4F1
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss SLC9A3R2 RAB26 PGP TRAF7 MIR4516 LOC105371049 CASKIN1 LOC106660606 RNPS1 MIR3180-5 TSC2 NPW TBL3 MIR4717 MIR1225 SNHG19 BRICD5 SNORD60 MIR940 DNASE1L2 MIR3677 ZNF598 NOXO1 ABCA3 GFER NTHL1 ECI1 SYNGR3 MIR6511B1 MLST8 E4F1 PKD1
nsv457353 Chr.16:2255538 - 2365929 on Build GRCh38 Loss MIR4717 ABCA3 LOC106660606 RNPS1 ABCA17P MIR940 MIR3677
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain LOC652276 RAB26 PGP NTN3 TRAF7 MIR6767 MIR4516 LOC105371049 CASKIN1 LOC106660606 RNPS1 MIR3180-5 TSC2 LOC729652 ATP6V0C CCNF PDPK1 MIR4717 AMDHD2 C16orf59 MIR1225 SNHG19 CEMP1 BRICD5 SNORD60 TBC1D24 ABCA17P MIR940 DNASE1L2 MIR3677 MIR6768 ABCA3 ECI1 MIR3178 MIR6511B1 MLST8 E4F1 PKD1
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion RAB26 PGP MIR4717 TRAF7 SNHG19 BRICD5 SNORD60 MIR940 DNASE1L2 CASKIN1 MIR3677 ABCA3 LOC106660606 ECI1 RNPS1 MLST8 E4F1

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