Genomic Map
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Target Gene Details
Entrez Gene ID: | 56994 |
Gene Name: | choline phosphotransferase 1 |
Gene Aliases: |
CPT, CPT1 |
Location: |
Chr.12:101697639-101752038 on Build GRCh38 |
Assay Gene Location: | Within Exon 10 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| CHPT1 | NM_020244.2 | 9 | 1455 | NP_064629.2 |
| XM_011538574.1 | 8 | 1290 | XP_011536876.1 | |
| XM_011538575.1 | 9 | 1152 | XP_011536877.1 | |
| AF047431.1 | 9 | 1025 | AAD44019.1 | |
| AF111803.1 | 8 | 890 | AAL39005.1 | |
| AF195623.1 | 9 | 1402 | AAF87947.1 | |
| AF195624.1 | 10 | 1429 | AAF87948.1 | |
| AK075211.1 | 9 | 1422 | ||
| AK226127.1 | 9 | 3652 | ||
| AY280609.1 | AAP34412.1 | |||
| AY280610.1 | AAP34413.1 | |||
| BC020819.1 | 9 | 1409 | AAH20819.1 | |
| BC050429.1 | 9 | 1448 | AAH50429.1 |
Target Gene Details
Entrez Gene ID: | 50511 |
Gene Name: | synaptonemal complex protein 3 |
Gene Aliases: |
COR1, RPRGL4, SCP3, SPGF4 |
Location: |
Chr.12:101728648-101739722 on Build GRCh38 |
Assay Gene Location: | Within Exon 8 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SYCP3 | NM_001177948.1 | NP_001171419.1 | ||
| NM_001177949.1 | NP_001171420.1 | |||
| NM_153694.4 | NP_710161.1 | |||
| XM_005268922.4 | 8 | 1195 | XP_005268979.3 | |
| XM_005268924.1 | 8 | 933 | XP_005268981.1 | |
| XM_005268925.1 | 8 | 938 | XP_005268982.1 | |
| XM_005268926.3 | 8 | 917 | XP_005268983.1 | |
| XM_005268927.2 | 8 | 906 | XP_005268984.1 | |
| XM_011538421.2 | 8 | 1117 | XP_011536723.2 | |
| XM_017019368.1 | XP_016874857.1 | |||
| AF492003.1 | AAN06611.1 | |||
| AF517774.1 | AAP47204.1 | |||
| AI015251.1 | ||||
| AK125930.1 | ||||
| BC062662.1 | AAH62662.1 | |||
| BG201028.1 | ||||
| BG202454.1 | 2 | 364 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv860 | Chr.12:101726092 - 101737832 on Build GRCh38 | Deletion |
 CHPT1
SYCP3
|
| nsv832497 | Chr.12:101667198 - 101861862 on Build GRCh38 | Gain |
GNPTAB
CHPT1
SYCP3
MYBPC1
|
| nsv977144 | Chr.12:101727921 - 101734218 on Build GRCh38 | Duplication |
CHPT1
SYCP3
|
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Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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