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See other ATP6V0C CNV Assays ›
Gene Symbol
ATP6V0C
Assay Reference Genome
Location

Chr.16:2519886 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03025107_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 527

Gene Name:

 ATPase H+ transporting V0 subunit c

Gene Aliases:

 ATP6C, ATP6L, ATPL, VATL, VPPC, Vma3

Location:

 Chr.16:2513726-2520223 on Build GRCh38

Assay Gene Location:

 Within Exon 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ATP6V0C NM_001198569.1 4 684 NP_001185498.1
NM_001694.3 3 843 NP_001685.1
BC004537.2 3 727 AAH04537.1
BC007389.2 3 731 AAH07389.1
BC007759.2 3 715 AAH07759.1
BC009290.2 3 748 AAH09290.1
M62762.1 3 839 AAA60039.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MAPK8IP3 TPSD1 FAHD1 MPG NUBP2 CRAMP1 TBC1D24 RHOT2 LOC105371045 MRPL28 RNPS1 MIR6768 RHBDL1 RGS11 MSLN SYNGR3 CAPN15 MIR3180-5 MIR3177 FBXL16 LINC00235 LOC100134368 LINC00254 NDUFB10 LOC105371038 TPSB2 LOC105371046 EME2 BRICD5 ATP6V0C NOXO1 SNORD60 SNORA10 SNHG9 PKD1 LOC100287175 RPL3L PDPK1 GNG13 TPSG1 RAB11FIP3 C16orf91 E4F1 LMF1 UNKL PIGQ RPUSD1 DECR2 ERVK13-1 LOC101929280 FLJ42627 CCDC78 PRSS27 LOC105371047 MIR6859-4 RAB40C MIR6511B1 LOC729652 WDR90 ZNF598 MRPS34 CHTF18 ABCA3 MIR3178 FAM173A SNRNP25 HBZ DNASE1L2 METRN POLR3K MIR4516 LOC105371049 DDX11L10 PDIA2 C1QTNF8 HN1L METTL26 NHLRC4 AMDHD2 MIR662 RNF151 NME4 SNORA64 HBA1 UBE2I HBQ1 HAGH GFER WFIKKN1 PRSS29P SSTR5 LOC652276 PTX4 RHBDF1 PRR35 TMEM8A IFT140 STUB1 CCNF LOC107984876 CEMP1 GNPTG CLCN7 SNHG19 PGP LOC106660606 PRR25 TRAF7 NME3 MIR3176 SLC9A3R2 MIR5587 TSC2 IGFALS CACNA1H RPS2 AXIN1 MIR3677 MIR1225 NTN3 RPL23AP5 HS3ST6 SOX8 ABCA17P MIR4717 LUC7L MCRIP2 NARFL HBM MIR6767 TSR3 CASKIN1 TMEM204 MSRB1 MEIOB KCTD5 TBL3 CCDC154 SSTR5-AS1 LMF1-AS1 JMJD8 BAIAP3 ECI1 NTHL1 LOC107987233 FAM234A MIR940 MLST8 SNORA78 SPSB3 NPW ARHGDIG HAGHL HBA2 LOC105371184 TPSAB1 NPRL3 WDR24 C16orf59 RAB26 TELO2 WASIR2
nsv1121904 Chr.16:2519699 - 2520599 on Build GRCh38 Deletion AMDHD2 ATP6V0C
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss ERVK13-1 CEMP1 FLJ42627 PRSS27 PRSS33 AMDHD2 ATP6V0C PRSS41 TBC1D24 TCEB2 MIR3178 PDPK1 KCTD5 SRRM2-AS1 PRSS21 LOC652276 SRRM2
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss PDPK1 ERVK13-1 CEMP1 FLJ42627 AMDHD2 ATP6V0C LOC652276 TBC1D24 MIR3178
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain CCNF CEMP1 MIR6767 MIR6511B1 SNHG19 LOC729652 CASKIN1 PGP LOC106660606 TBC1D24 ABCA3 MIR3178 RNPS1 MIR6768 TRAF7 MIR3180-5 DNASE1L2 MIR4516 ECI1 LOC105371049 TSC2 MIR940 MLST8 MIR3677 MIR1225 NTN3 BRICD5 AMDHD2 ATP6V0C SNORD60 PKD1 PDPK1 ABCA17P MIR4717 E4F1 C16orf59 RAB26 LOC652276

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More Information


Additional Information:

For this assay, SNP(s) [rs75618318] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

ATP synthase

Gene Ontology Categories:

Function(s) Process(es)


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