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See other ATP6V0C CNV Assays ›
Gene Symbol
ATP6V0C
Assay Reference Genome
Location

Chr.16:2519886 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03025107_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 527

Gene Name:

 ATPase H+ transporting V0 subunit c

Gene Aliases:

 ATP6C, ATP6L, ATPL, VATL, VPPC, Vma3

Location:

 Chr.16:2513726-2520223 on Build GRCh38

Assay Gene Location:

 Within Exon 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ATP6V0C NM_001198569.1 4 684 NP_001185498.1
NM_001694.3 3 843 NP_001685.1
BC004537.2 3 727 AAH04537.1
BC007389.2 3 731 AAH07389.1
BC007759.2 3 715 AAH07759.1
BC009290.2 3 748 AAH09290.1
M62762.1 3 839 AAA60039.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication TMEM8A HBZ AXIN1 PRSS29P LOC105371038 SNHG9 CHTF18 NPW CRAMP1 NME3 LOC729652 BRICD5 PRR35 SSTR5-AS1 TELO2 SOX8 MIR6768 GNG13 LINC00235 MIR3178 EME2 LOC101929280 TBC1D24 ABCA17P LOC105371047 DECR2 HS3ST6 NOXO1 LOC106660606 MIR6767 CAPN15 LOC652276 SNHG19 ARHGDIG STUB1 SPSB3 PIGQ UBE2I MAPK8IP3 HBM MPG HBA2 MIR3177 ZNF598 SLC9A3R2 MSRB1 METTL26 LOC105371046 TPSAB1 TSR3 NARFL GNPTG KCTD5 MEIOB C1QTNF8 SNORD60 ERVK13-1 LOC105371184 CCDC78 CACNA1H MIR6859-4 LINC00254 FAM234A NPRL3 LOC105371049 GFER WDR24 HBQ1 FBXL16 TPSG1 RAB26 HN1L NTN3 UNKL LUC7L LOC100287175 LOC107984876 CCNF METRN LMF1 SNORA78 MIR1225 LOC107987233 IFT140 NTHL1 FAHD1 SNORA10 CEMP1 CLCN7 MIR3677 MIR6511B1 RGS11 WASIR2 RAB11FIP3 RHOT2 RPUSD1 RNF151 C16orf59 CCDC154 HAGHL MSLN MCRIP2 TPSB2 NHLRC4 LMF1-AS1 WFIKKN1 MIR662 HAGH IGFALS MIR5587 RNPS1 RPS2 MIR940 C16orf91 PGP E4F1 SNORA64 FLJ42627 MIR3180-5 ATP6V0C TSC2 PDPK1 JMJD8 MRPS34 RAB40C WDR90 PKD1 MLST8 NME4 HBA1 RHBDL1 DDX11L10 BAIAP3 TPSD1 PRSS27 MIR4516 PTX4 FAM173A SSTR5 SYNGR3 PDIA2 SNRNP25 LOC105371045 RPL23AP5 AMDHD2 CASKIN1 LOC100134368 MIR3176 MIR4717 MRPL28 ABCA3 TRAF7 NDUFB10 PRR25 POLR3K NUBP2 RHBDF1 DNASE1L2 TBL3 ECI1 RPL3L TMEM204
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss SRRM2 PRSS41 LOC652276 FLJ42627 ATP6V0C CEMP1 SRRM2-AS1 PRSS33 PDPK1 TCEB2 AMDHD2 PRSS21 KCTD5 MIR3178 ERVK13-1 PRSS27 TBC1D24
nsv1121904 Chr.16:2519699 - 2520599 on Build GRCh38 Deletion ATP6V0C AMDHD2
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss LOC652276 MIR3178 FLJ42627 ATP6V0C CEMP1 ERVK13-1 PDPK1 TBC1D24 AMDHD2
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain E4F1 MIR3180-5 ATP6V0C TSC2 CEMP1 PDPK1 LOC729652 MIR3677 BRICD5 MIR6511B1 PKD1 MIR6768 MLST8 MIR3178 SNORD60 MIR4516 TBC1D24 ABCA17P C16orf59 LOC106660606 MIR6767 LOC105371049 LOC652276 SNHG19 AMDHD2 CASKIN1 MIR4717 RAB26 NTN3 RNPS1 ABCA3 TRAF7 MIR940 CCNF DNASE1L2 ECI1 PGP MIR1225

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More Information


Additional Information:

For this assay, SNP(s) [rs75618318] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

ATP synthase

Gene Ontology Categories:

Function(s) Process(es)


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