Hs03029232_cn

• Gene Symbol: GDE1
• Assay Reference Genome Location: Chr.16:19502977 on build GRCh38
• Cytoband: 16p12.3

Target Gene Details

• Entrez Gene ID: 51573
• Gene Name: glycerophosphodiester phosphodiesterase 1
• Gene Aliases: 363E6.2, MIR16
• Location: Chr.16:19501693-19522145 on Build GRCh38
• Assay Gene Location: Within Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
GDE1	NM_001324066.1	6	1666	NP_001310995.1
	NM_001324067.1	5	1577	NP_001310996.1
	NM_016641.3	6	1653	NP_057725.1
	NR_136689.1	6	1702
	AF306698.1	6	1562
	BC014981.1	6	1544	AAH14981.1
	BC025273.1			AAH25273.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv833163	Chr.16:19457512 - 19628716 on Build GRCh38	Gain	C16orf62 CCP110 TMC5 GDE1
nsv571582	Chr.16:19038056 - 19790801 on Build GRCh38	Gain	CLEC19A C16orf62 CCP110 LOC102723385 SYT17 ITPRIPL2 COQ7 TMC5 GDE1 IQCK KNOP1 TMC7
nsv436835	Chr.16:18930652 - 21500976 on Build GRCh38	Insertion	ACSM2A SMG1P3 COQ7 TMC5 GP2 KNOP1 CLEC19A PDILT ACSM2B ZP2 ERI2 LOC102723385 ANKS4B UMOD LOC100190986 ACSM3 TMEM159 IQCK DCUN1D3 DNAH3 CRYM-AS1 C16orf62 CCP110 THUMPD1 ACSM5 ACSM1 GDE1 CRYM SNX29P1 LOC81691 LYRM1 NPIPB3 SYT17 GPRC5B ITPRIPL2 GPR139 TMC7

More Information

Additional Information:

For this assay, SNP(s) [rs76065554] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

phosphodiesterase

Gene Ontology Categories:

Process(es)

lipid metabolic process
glycerophospholipid catabolic process

Function(s)

glycerophosphodiester phosphodiesterase activity
metal ion binding
glycerophosphoinositol glycerophosphodiesterase activity