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See other SCAF1 CNV Assays ›
Gene Symbol
SCAF1
Assay Reference Genome
Location

Chr.19:49654301 on build GRCh38
Cytoband
19q13.33
Assay ID Hs03064498_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 58506

Gene Name:

 SR-related CTD associated factor 1

Gene Aliases:

 SRA1

Location:

 Chr.19:49640483-49658649 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 9 - Exon 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SCAF1 NM_021228.2 NP_067051.2
XM_005259122.4 XP_005259179.1
XM_011527194.2 XP_011525496.1
XM_017027083.1 XP_016882572.1
AK024444.1
BC011662.2 AAH11662.2
BC018398.1 AAH18398.1
BC053992.1 AAH53992.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469715 Chr.19:49572544 - 49730286 on Build GRCh38 Gain+Loss BCL2L12 PRMT1 PRRG2 CPT1C ADM5 NOSIP SCAF1 MIR5088 IRF3 RRAS PRR12
nsv833865 Chr.19:49572545 - 49730286 on Build GRCh38 Gain+Loss BCL2L12 PRMT1 PRRG2 CPT1C ADM5 NOSIP SCAF1 MIR5088 IRF3 RRAS PRR12
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss SNRNP70 SNAR-G2 SNAR-C1 CGB8 CD37 CYTH2 CARD8-AS1 LOC105372430 LIG1 ZNF114 CGB5 TULP2 DKKL1 ADM5 SNAR-G1 AP2A1 RUVBL2 MIR6800 SPACA4 SEC1P BCL2L12 SNAR-A10 TRPM4 SNAR-C3 PPFIA3 CA11 CPT1C SNORD33 CGB2 FUT2 SULT2B1 MIR4324 PLA2G4C SNAR-C5 SNORD32A C19orf68 EMP3 KCNA7 CARD8 GRIN2D FGF21 SIGLEC11 RPS11 FUT1 SNAR-D SNAR-A3 LOC100287477 RPL18 IZUMO1 FAM83E SCAF1 NTF4 RRAS BSPH1 SPHK2 DHDH CCDC155 SNAR-A2 GYS1 SLC6A16 BAX NTN5 SNAR-A12 PTOV1-AS2 SNORD34 ATF5 MIR150 KCNJ14 PNKP SYNGR4 PTOV1-AS1 RCN3 LMTK3 NOSIP CGB1 LOC101059948 SNORD35A MIR4749 MAMSTR SNAR-A1 KDELR1 SNAR-A13 DBP MIR6798 NUCB1-AS1 SNAR-B2 PTOV1 NUP62 SNORD35B CABP5 MIR5088 SNAR-A6 LIN7B SNAR-A8 LOC101928295 GRWD1 IRF3 RASIP1 SNAR-A4 TMEM143 MIR6799 TSKS PTH2 SNAR-A5 TEAD2 HRC AKT1S1 PIH1D1 MED25 PPP1R15A GFY ALDH16A1 SNAR-A7 SNAR-A11 SNAR-B1 MIR4751 BCAT2 VRK3 PRRG2 MIR4750 ELSPBP1 LHB FLT3LG LOC105447645 RPL13A PRMT1 FTL PRR12 PLA2G4C-AS1 C19orf73 PLEKHA4 FLJ26850 SNAR-A14 SNAR-A9 SNAR-C4 TBC1D17 FCGRT ZNF473 HSD17B14 FUZ CGB3 IL4I1 SLC17A7 SIGLEC16 NUCB1 CGB7 CCDC114 SNAR-C2
nsv470150 Chr.19:49618821 - 49856789 on Build GRCh38 Gain MIR6800 BCL2L12 MIR4749 CPT1C IRF3 PTOV1-AS2 MIR6799 TSKS FUZ PRMT1 PTOV1 ADM5 PTOV1-AS1 SCAF1 MED25 MIR5088 AP2A1 RRAS PRR12
nsv833864 Chr.19:49551790 - 49733819 on Build GRCh38 Gain BCL2L12 PRMT1 PRRG2 CPT1C ADM5 NOSIP SCAF1 MIR5088 IRF3 RRAS PRR12
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion MIR4749 MIR4751 PRRG2 MIR4750 PRMT1 PTOV1 NUP62 ADM5 SCAF1 MIR5088 AP2A1 RRAS PRR12 MIR6800 BCL2L12 CPT1C TBC1D17 IRF3 PTOV1-AS2 MIR6799 TSKS FUZ ATF5 IL4I1 PNKP AKT1S1 PTOV1-AS1 NOSIP MED25
nsv579909 Chr.19:49649784 - 49659652 on Build GRCh38 Loss SCAF1 IRF3
nsv1160655 Chr.19:49489110 - 49841830 on Build GRCh38 Deletion SNORD32A SNORD35A PRRG2 RPS11 RPL13A PRMT1 SNORD35B ADM5 SCAF1 MIR5088 AP2A1 RRAS PRR12 MIR6800 BCL2L12 CPT1C SNORD33 FCGRT IRF3 MIR6799 SNORD34 TSKS FUZ MIR150 PTOV1-AS1 RCN3 NOSIP MED25
nsv828578 Chr.19:49560777 - 49680548 on Build GRCh38 Loss BCL2L12 PRMT1 PRRG2 NOSIP SCAF1 IRF3 RRAS PRR12
nsv579908 Chr.19:49645135 - 49663393 on Build GRCh38 Loss SCAF1 IRF3

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More Information


Additional Information:

For this assay, SNP(s) [rs76887196] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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