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See other SCAF1 CNV Assays ›
Gene Symbol
SCAF1
Assay Reference Genome
Location

Chr.19:49654301 on build GRCh38
Cytoband
19q13.33
Assay ID Hs03064498_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 58506

Gene Name:

 SR-related CTD associated factor 1

Gene Aliases:

 SRA1

Location:

 Chr.19:49640483-49658649 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 9 - Exon 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SCAF1 NM_021228.2 NP_067051.2
XM_005259122.4 XP_005259179.1
XM_011527194.2 XP_011525496.1
XM_017027083.1 XP_016882572.1
AK024444.1
BC011662.2 AAH11662.2
BC018398.1 AAH18398.1
BC053992.1 AAH53992.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469715 Chr.19:49572544 - 49730286 on Build GRCh38 Gain+Loss CPT1C PRRG2 IRF3 NOSIP RRAS SCAF1 MIR5088 PRR12 PRMT1 ADM5 BCL2L12
nsv833865 Chr.19:49572545 - 49730286 on Build GRCh38 Gain+Loss CPT1C PRRG2 IRF3 NOSIP RRAS SCAF1 MIR5088 PRR12 PRMT1 ADM5 BCL2L12
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss SNAR-A7 BSPH1 SNAR-A10 HRC EMP3 PTH2 GRIN2D SNAR-A5 TMEM143 PTOV1 TBC1D17 NUCB1 NTN5 SNORD35A KCNA7 NUCB1-AS1 SEC1P C19orf73 ZNF473 LHB ELSPBP1 FGF21 LOC105447645 DHDH GFY NUP62 LMTK3 MIR4751 SNAR-A6 SNORD33 PRRG2 IRF3 TULP2 SNAR-A9 KDELR1 DKKL1 SNAR-A14 SNORD35B FTL SNAR-C2 SIGLEC16 AP2A1 CGB5 PLA2G4C CGB2 SLC6A16 LIN7B PLEKHA4 CGB8 IZUMO1 FUT1 CCDC155 SNAR-A2 BCL2L12 SNAR-B1 SNAR-A13 SULT2B1 CARD8-AS1 MIR6799 MAMSTR PRMT1 TRPM4 CGB3 SNAR-C1 SNAR-D FLT3LG MED25 TSKS AKT1S1 RUVBL2 MIR4750 NOSIP SNAR-A12 BAX MIR5088 ALDH16A1 CGB1 SNAR-G2 SNAR-B2 CARD8 CD37 CCDC114 CABP5 GYS1 SPHK2 SNAR-C5 VRK3 PPFIA3 PPP1R15A FUT2 MIR6798 C19orf68 FUZ SNAR-A11 PLA2G4C-AS1 RRAS SCAF1 NTF4 SNAR-A8 RPS11 IL4I1 PTOV1-AS1 SPACA4 PNKP PTOV1-AS2 MIR4749 SNORD34 PRR12 CGB7 GRWD1 FAM83E RASIP1 LOC105372430 CA11 BCAT2 MIR6800 ADM5 RPL18 RPL13A MIR4324 SNAR-A1 ZNF114 CYTH2 SNRNP70 MIR150 FLJ26850 SNORD32A SNAR-A4 LOC101059948 KCNJ14 FCGRT SLC17A7 PIH1D1 SNAR-G1 LOC100287477 SNAR-A3 HSD17B14 CPT1C LOC101928295 RCN3 SYNGR4 DBP TEAD2 SNAR-C3 ATF5 SNAR-C4 LIG1 SIGLEC11
nsv817854 Chr.19:49618821 - 49726387 on Build GRCh38 Gain CPT1C IRF3 RRAS SCAF1 MIR5088 PRR12 PRMT1 ADM5 BCL2L12
nsv579909 Chr.19:49649784 - 49659652 on Build GRCh38 Loss IRF3 SCAF1
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion AP2A1 FUZ PTOV1 TBC1D17 RRAS SCAF1 BCL2L12 IL4I1 PTOV1-AS1 PNKP MIR6799 PTOV1-AS2 MIR4749 PRR12 PRMT1 NUP62 CPT1C MIR4751 MED25 TSKS PRRG2 IRF3 AKT1S1 MIR4750 NOSIP MIR5088 ATF5 MIR6800 ADM5
nsv833864 Chr.19:49551790 - 49733819 on Build GRCh38 Gain CPT1C PRRG2 IRF3 NOSIP RRAS SCAF1 MIR5088 PRR12 PRMT1 ADM5 BCL2L12
nsv1160655 Chr.19:49489110 - 49841830 on Build GRCh38 Deletion SNORD35B AP2A1 MIR150 SNORD32A FUZ RRAS FCGRT SCAF1 SNORD35A RPS11 BCL2L12 PTOV1-AS1 MIR6799 SNORD34 PRR12 PRMT1 CPT1C MED25 TSKS SNORD33 PRRG2 IRF3 RCN3 NOSIP MIR5088 MIR6800 ADM5 RPL13A
nsv828578 Chr.19:49560777 - 49680548 on Build GRCh38 Loss PRRG2 IRF3 NOSIP RRAS SCAF1 PRR12 PRMT1 BCL2L12
nsv579908 Chr.19:49645135 - 49663393 on Build GRCh38 Loss IRF3 SCAF1

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More Information


Additional Information:

For this assay, SNP(s) [rs76887196] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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