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Assay Reference Genome
Location

Chr.1:906202 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03329277_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4n111 Chr.1:869076 - 914637 on Build GRCh38 Duplication LOC284600 FAM41C
nsv1004962 Chr.1:629241 - 915295 on Build GRCh38 Gain LINC00115 FAM87B LOC100287934 MIR6723 MTND2P28 LINC01128 LOC107984841 OR4F16 LOC284600 LOC100133331 MTND1P23 LOC100288069 FAM41C
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss GNB1 TMEM240 FAM132A ATAD3B ATAD3C SLC35E2B LOC729737 MIR6859-2 GABRD AURKAIP1 FAM41C TTLL10-AS1 TNFRSF4 LOC105378589 TMEM88B LOC107984841 MORN1 DVL1 WASH7P CFAP74 MIR200A MIR429 TAS1R3 C1orf159 LOC105378592 FAM138A SSU72 MIR6727 TTLL10 SLC35E2 OR4F16 MMP23B MIR200B LOC100134822 MRPL20 CDK11A LOC284600 MMP23A OR4F29 LOC100133331 MTND1P23 MIB2 DDX11L1 LOC102724312 LOC107985729 LOC105378591 SKI OR4F5 ANKRD65 LOC105378949 LOC100288175 TMEM52 CDK11B LOC107985728 KLHL17 LOC100288069 SCNN1D UBE2J2 SAMD11 CPTP CALML6 LOC101928626 PERM1 MTND2P28 CPSF3L LINC01128 VWA1 CCNL2 MIR6808 ACAP3 LOC100506504 FNDC10 LOC100132287 MIR6726 LINC00115 MXRA8 FAM87B PLEKHN1 LOC100287934 MIR6723 PUSL1 SDF4 LOC100129534 LINC01342 AGRN MIR1302-2 LOC148413 MIR6859-1 NOC2L FAAP20 LOC105378947 HES4 ISG15 ATAD3A RNF223 PRKCZ NADK TNFRSF18 LOC100130417 LOC102725121 LOC105378948 B3GALT6
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion NOC2L PLEKHN1 SAMD11 C1orf159 PERM1 HES4 LOC100288175 ISG15 AGRN RNF223 LOC107985728 LOC284600 LOC100130417 KLHL17 LOC105378948
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion NOC2L PLEKHN1 SAMD11 LOC107985728 LOC284600 PERM1 LOC100130417 KLHL17
dgv1n67 Chr.1:811028 - 914557 on Build GRCh38 Gain LINC00115 FAM87B LOC284600 LINC01128 FAM41C
nsv1005935 Chr.1:805477 - 915295 on Build GRCh38 Gain LINC00115 FAM87B LOC284600 LINC01128 FAM41C
esv3584981 Chr.1:837710 - 917284 on Build GRCh38 Loss LOC284600 LOC100130417 LINC01128 FAM41C
nsv1009537 Chr.1:841742 - 915295 on Build GRCh38 Gain LOC284600 LINC01128 FAM41C
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain MIR200A PLEKHN1 MIR429 C1orf159 SDF4 LOC100288175 LINC01342 TTLL10 AGRN LOC107985728 MIR200B KLHL17 FAM41C NOC2L SAMD11 TTLL10-AS1 TNFRSF4 PERM1 HES4 ISG15 RNF223 LOC284600 TNFRSF18 LOC100130417 LOC105378948
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain LINC00115 FAM87B PLEKHN1 LOC100287934 MIR6723 C1orf159 LOC100288175 AGRN OR4F16 LOC107985728 KLHL17 LOC100288069 FAM41C NOC2L SAMD11 LOC101928626 PERM1 MTND2P28 LOC105378947 HES4 LINC01128 LOC107984841 ISG15 RNF223 LOC284600 LOC100133331 MTND1P23 LOC100130417 LOC105378948
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC102724312 LOC107985729 ANKRD65 LOC100288175 CDK11B TMEM240 LOC107985728 FAM132A ATAD3B ATAD3C SLC35E2B KLHL17 LOC100288069 SCNN1D UBE2J2 AURKAIP1 FAM41C SAMD11 CPTP TTLL10-AS1 TNFRSF4 PERM1 TMEM88B CPSF3L LINC01128 VWA1 CCNL2 MIR6808 DVL1 ACAP3 FNDC10 MIR6726 LINC00115 MIR200A MXRA8 FAM87B PLEKHN1 MIR429 TAS1R3 LOC100287934 C1orf159 PUSL1 SDF4 SSU72 MIR6727 LINC01342 TTLL10 SLC35E2 AGRN MMP23B MIR200B LOC148413 NOC2L MRPL20 CDK11A HES4 ISG15 ATAD3A RNF223 LOC284600 MMP23A NADK TNFRSF18 LOC100130417 MIB2 LOC105378948 B3GALT6
dgv1n111 Chr.1:690090 - 939522 on Build GRCh38 Duplication LINC00115 FAM87B SAMD11 LOC100287934 LINC01128 LOC107984841 OR4F16 LOC107985728 LOC284600 LOC100133331 LOC100130417 LOC100288069 FAM41C
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LINC00115 MIR200A FAM87B PLEKHN1 MIR429 C1orf159 SDF4 LOC100288175 LINC01342 TTLL10 AGRN LOC107985728 FAM132A MIR200B KLHL17 UBE2J2 FAM41C NOC2L SAMD11 TTLL10-AS1 TNFRSF4 PERM1 HES4 LINC01128 ISG15 RNF223 LOC284600 TNFRSF18 LOC100130417 LOC105378948 B3GALT6
dgv3n111 Chr.1:783283 - 939522 on Build GRCh38 Duplication LINC00115 FAM87B SAMD11 LOC107985728 LOC284600 LOC100287934 LOC100130417 LINC01128 FAM41C
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain MIR200A MXRA8 PLEKHN1 MIR429 TAS1R3 C1orf159 PUSL1 SDF4 ANKRD65 LOC100288175 MIR6727 LINC01342 TTLL10 AGRN LOC107985728 FAM132A MIR200B KLHL17 SCNN1D UBE2J2 LOC148413 AURKAIP1 NOC2L SAMD11 CPTP TTLL10-AS1 TNFRSF4 MRPL20 PERM1 TMEM88B CPSF3L HES4 ISG15 RNF223 CCNL2 LOC284600 MIR6808 TNFRSF18 DVL1 LOC100130417 ACAP3 MIR6726 LOC105378948 B3GALT6
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain NOC2L PLEKHN1 SAMD11 LOC107985728 LOC284600 PERM1 LOC100130417 KLHL17 HES4 LINC01128 FAM41C
esv3584976 Chr.1:733250 - 914824 on Build GRCh38 Gain LINC00115 FAM87B LOC284600 LOC100287934 LOC100288069 LINC01128 LOC107984841 FAM41C

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More Information


Additional Information:

For this assay, SNP(s) [rs114464092] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intergenic/Unknown DGV Variation

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