Hs03344070_cn

• Gene Symbol: LYPD8
• Assay Reference Genome Location: Chr.1:248739408 on build GRCh38
• Cytoband: 1q44

Target Gene Details

• Entrez Gene ID: 646627
• Gene Name: LY6/PLAUR domain containing 8
• Gene Aliases: -
• Location: Chr.1:248739415-248755787 on Build GRCh38
• Assay Gene Location: Overlaps - Exon 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LYPD8	NM_001085474.1			NP_001078943.1
	NM_001291283.1			NP_001278212.1
	AY358469.1			AAQ88833.1
	BQ027877.1
	CA433021.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3589566	Chr.1:248694761 - 248743533 on Build GRCh38	Loss	LYPD8 LOC101928226
dgv631n100	Chr.1:248574134 - 248930177 on Build GRCh38	Gain	OR14I1 OR2T10 PGBD2 LYPD8 ZNF692 LOC101928226 MIR3124 OR2T34 ZNF672 OR2T11 OR2T27 SH3BP5L OR2T35
nsv1013273	Chr.1:247656673 - 248784560 on Build GRCh38	Gain	OR2T4 LYPD8 OR2T1 OR9H1P TRIM58 OR14C36 OR2L13 OR2M1P OR2AK2 OR2T34 OR6F1 OR2W3 OR2M5 OR2T6 OR2M2 OR2T8 OR2L3 OR2M7 OR2T35 OR13G1 OR14A16 OR2T33 OR14I1 OR2G6 OR2T10 OR2T12 OR1C1 LOC101928226 OR11L1 OR2T29 OR2T5 OR2T3 OR2L2 OR2T2 OR2M3 OR2L5 OR2M4 OR2T11 OR2T27 OR2L8 OR2L1P
esv2750835	Chr.1:248359378 - 248864040 on Build GRCh38	Gain	OR14I1 OR2G6 OR2T10 OR2T4 LYPD8 OR2T1 ZNF692 LOC101928226 MIR3124 OR2T29 OR2T5 OR2T3 OR2T2 OR2T34 ZNF672 OR2T6 OR2T11 OR2T27 SH3BP5L OR2T35
esv3891415	Chr.1:247876411 - 248795772 on Build GRCh38	Gain	OR2T4 LYPD8 OR2T1 TRIM58 OR14C36 OR2L13 OR2M1P OR2AK2 OR2T34 OR2W3 OR2M5 OR2T6 OR2M2 OR2T8 OR2L3 OR2M7 OR2T35 OR2T33 OR14I1 OR2G6 OR2T10 OR2T12 LOC101928226 OR2T29 OR2T5 OR2T3 OR2L2 OR2T2 OR2M3 OR2L5 OR2M4 OR2T11 OR2T27 OR2L8 OR2L1P
esv3589571	Chr.1:248712001 - 248744759 on Build GRCh38	Gain	LYPD8
esv2750832	Chr.1:247897657 - 248873491 on Build GRCh38	Gain	OR2T4 PGBD2 LYPD8 OR2T1 ZNF692 OR14C36 OR2L13 OR2M1P OR2AK2 OR2T34 OR2M5 OR2T6 OR2M2 OR2T8 OR2L3 OR2M7 OR2T35 OR2T33 OR14I1 OR2G6 OR2T10 OR2T12 LOC101928226 MIR3124 OR2T29 OR2T5 OR2T3 OR2L2 OR2T2 OR2M3 ZNF672 OR2L5 OR2M4 OR2T11 OR2T27 OR2L8 SH3BP5L OR2L1P
esv2656577	Chr.1:248694788 - 248743549 on Build GRCh38	Deletion	LYPD8 LOC101928226

More Information

Additional Information:

For this assay, SNP(s) [rs113917587,rs73148520] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Process(es)

defense response to Gram-negative bacterium