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See other TTLL10 CNV Assays ›
Gene Symbol
TTLL10
Assay Reference Genome
Location

Chr.1:1176453 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03356052_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 254173

Gene Name:

 tubulin tyrosine ligase like 10

Gene Aliases:

 TTLL5

Location:

 Chr.1:1173709-1197936 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TTLL10 NM_001130045.1 NP_001123517.1
XM_011541177.2 XP_011539479.1
XM_017000912.1 XP_016856401.1
AK124125.1 BAC85781.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss PERM1 AURKAIP1 MIR200A B3GALT6 MTND2P28 TNFRSF4 LOC729737 RNF223 MIR200B SDF4 GNB1 AGRN TNFRSF18 NOC2L MIR429 ISG15 ATAD3C CCNL2 LOC105378948 DVL1 LOC100132287 MRPL20 LOC105378589 MIR6859-2 KLHL17 SCNN1D SKI MMP23A CDK11B LOC105378592 MIR6723 OR4F16 GABRD TMEM240 MIR6808 PLEKHN1 SLC35E2B LOC100129534 LINC01342 LOC100288069 TTLL10 SAMD11 SSU72 CDK11A MIB2 C1orf159 LOC105378947 FAAP20 ANKRD65 TTLL10-AS1 NADK LOC105378591 LOC100288175 LOC101928626 LOC148413 MORN1 LOC100134822 LOC102724312 LOC107985728 TMEM88B LINC00115 FAM41C MXRA8 VWA1 LOC102725121 MIR6727 LOC105378949 LOC100133331 UBE2J2 LOC100287934 LOC107985729 ATAD3A CALML6 LOC100130417 LOC107984841 OR4F29 ACAP3 LOC100506504 CPTP CPSF3L OR4F5 HES4 FAM132A TAS1R3 DDX11L1 FAM87B MTND1P23 MMP23B FAM138A SLC35E2 PRKCZ LOC284600 ATAD3B FNDC10 WASH7P CFAP74 MIR1302-2 MIR6726 LINC01128 TMEM52 PUSL1 MIR6859-1
nsv544954 Chr.1:1139244 - 1186414 on Build GRCh38 Loss TTLL10 MIR200B MIR200A TTLL10-AS1 LINC01342 MIR429
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain TTLL10 LOC105378948 MIR200A B3GALT6 C1orf159 TNFRSF4 FAM132A RNF223 MIR200B SCNN1D SDF4 UBE2J2 TNFRSF18 TTLL10-AS1 LINC01342 MIR429
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss ACAP3 TTLL10 MIR200A B3GALT6 C1orf159 TNFRSF4 FAM132A RNF223 MIR200B SCNN1D SDF4 UBE2J2 MIR6726 TNFRSF18 TTLL10-AS1 LINC01342 MIR429
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10 SDF4 TNFRSF18 B3GALT6 TTLL10-AS1 TNFRSF4
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain PERM1 LOC100288175 MIR200A HES4 TNFRSF4 RNF223 MIR200B LOC107985728 SDF4 AGRN TNFRSF18 PLEKHN1 LINC01342 FAM41C NOC2L MIR429 ISG15 TTLL10 SAMD11 LOC105378948 LOC284600 C1orf159 KLHL17 TTLL10-AS1 LOC100130417
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication ACAP3 CPTP LOC100288175 MIR200A CPSF3L B3GALT6 TNFRSF4 FAM132A RNF223 MIR200B SDF4 TAS1R3 AGRN TNFRSF18 LINC01342 MIR429 TTLL10 LOC105378948 MIR6727 C1orf159 SCNN1D UBE2J2 MIR6726 TTLL10-AS1 PUSL1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss PERM1 LOC100288175 AURKAIP1 MIR200A LOC148413 B3GALT6 TNFRSF4 LOC102724312 RNF223 MIR200B LOC107985728 TMEM88B SDF4 LINC00115 AGRN TNFRSF18 FAM41C NOC2L MXRA8 MIR429 ISG15 VWA1 ATAD3C CCNL2 LOC105378948 DVL1 MIR6727 MRPL20 KLHL17 SCNN1D UBE2J2 LOC100287934 LOC107985729 MMP23A CDK11B ATAD3A LOC100130417 ACAP3 CPTP CPSF3L HES4 FAM132A TMEM240 TAS1R3 MIR6808 FAM87B PLEKHN1 SLC35E2B LINC01342 MMP23B LOC100288069 TTLL10 SAMD11 SLC35E2 SSU72 LOC284600 CDK11A ATAD3B MIB2 C1orf159 FNDC10 MIR6726 LINC01128 ANKRD65 TTLL10-AS1 NADK PUSL1
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss PERM1 LOC100288175 MIR200A B3GALT6 HES4 TNFRSF4 FAM132A RNF223 MIR200B LOC107985728 SDF4 LINC00115 FAM87B AGRN TNFRSF18 PLEKHN1 LINC01342 FAM41C NOC2L MIR429 ISG15 TTLL10 SAMD11 LOC105378948 LOC284600 C1orf159 KLHL17 UBE2J2 LINC01128 TTLL10-AS1 LOC100130417
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion ACAP3 CPTP AURKAIP1 MIR200A CPSF3L LOC148413 B3GALT6 TNFRSF4 LOC102724312 FAM132A MIR200B TMEM88B SDF4 TMEM240 TAS1R3 MIR6808 TNFRSF18 LINC01342 MMP23B MXRA8 MIR429 VWA1 TTLL10 ATAD3C CCNL2 DVL1 MIR6727 SSU72 MRPL20 ATAD3B MIB2 C1orf159 FNDC10 SCNN1D UBE2J2 LOC107985729 MIR6726 ANKRD65 TTLL10-AS1 CDK11B ATAD3A PUSL1
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain PERM1 ACAP3 CPTP LOC100288175 AURKAIP1 MIR200A CPSF3L LOC148413 B3GALT6 HES4 TNFRSF4 FAM132A RNF223 MIR200B LOC107985728 TMEM88B SDF4 TAS1R3 MIR6808 AGRN TNFRSF18 PLEKHN1 LINC01342 NOC2L MXRA8 MIR429 ISG15 TTLL10 CCNL2 SAMD11 LOC105378948 DVL1 MIR6727 MRPL20 LOC284600 C1orf159 KLHL17 SCNN1D UBE2J2 MIR6726 ANKRD65 TTLL10-AS1 LOC100130417 PUSL1
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion ISG15 PERM1 TTLL10 SAMD11 LOC105378948 LOC100288175 MIR200A C1orf159 HES4 TNFRSF4 KLHL17 RNF223 MIR200B SDF4 AGRN TNFRSF18 PLEKHN1 TTLL10-AS1 LINC01342 NOC2L MIR429
nsv509257 Chr.1:1151955 - 1189470 on Build GRCh38 Insertion TTLL10 MIR200B MIR200A TTLL10-AS1 MIR429
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain ACAP3 TTLL10 MIR6727 MIR200A CPSF3L B3GALT6 TNFRSF4 FAM132A MIR200B SCNN1D SDF4 UBE2J2 MIR6726 TNFRSF18 TTLL10-AS1 PUSL1 MIR429

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More Information


Additional Information:

For this assay, SNP(s) [rs563230438] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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