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See other TTLL10 CNV Assays ›
Gene Symbol
TTLL10
Assay Reference Genome
Location

Chr.1:1176864 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03375720_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 254173

Gene Name:

 tubulin tyrosine ligase like 10

Gene Aliases:

 TTLL5

Location:

 Chr.1:1173709-1197936 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TTLL10 NM_001130045.1 NP_001123517.1
XM_011541177.2 XP_011539479.1
XM_017000912.1 XP_016856401.1
AK124125.1 BAC85781.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv829536 Chr.1:1176767 - 1177709 on Build GRCh38 Gain TTLL10 TTLL10-AS1
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC100506504 LINC01128 ATAD3C ANKRD65 ATAD3B SAMD11 MIR6726 LINC00115 LOC105378592 LOC107985729 LOC105378948 DVL1 TTLL10 GABRD LOC102724312 MMP23B MIR6727 CPTP PERM1 SCNN1D SLC35E2 LOC100129534 CCNL2 SSU72 MIR200A MRPL20 TMEM240 LOC105378947 FAM41C LOC284600 TNFRSF4 TNFRSF18 FAM138A CDK11B OR4F5 GNB1 VWA1 LOC100130417 FAM132A B3GALT6 MIR6859-2 LOC107984841 LOC729737 WASH7P LOC100288175 MTND2P28 HES4 FAAP20 C1orf159 ATAD3A AGRN LOC107985728 MIB2 LOC105378589 TTLL10-AS1 MTND1P23 MIR6859-1 DDX11L1 SLC35E2B CALML6 KLHL17 MIR6723 LOC100287934 PRKCZ NADK NOC2L AURKAIP1 FNDC10 RNF223 TMEM52 MIR1302-2 LOC100134822 LOC100133331 LINC01342 PLEKHN1 LOC148413 MIR6808 MMP23A LOC102725121 LOC105378591 ISG15 MIR429 FAM87B OR4F16 ACAP3 OR4F29 SDF4 CDK11A MORN1 CFAP74 LOC100288069 TAS1R3 SKI TMEM88B LOC101928626 MIR200B MXRA8 UBE2J2 PUSL1 LOC105378949 CPSF3L LOC100132287
nsv544954 Chr.1:1139244 - 1186414 on Build GRCh38 Loss MIR200A TTLL10 MIR200B MIR429 LINC01342 TTLL10-AS1
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain MIR200A TTLL10 MIR429 TNFRSF4 TNFRSF18 SDF4 SCNN1D RNF223 MIR200B C1orf159 FAM132A B3GALT6 UBE2J2 LOC105378948 LINC01342 TTLL10-AS1
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss MIR200A TTLL10 MIR429 ACAP3 TNFRSF4 TNFRSF18 SDF4 MIR6726 SCNN1D RNF223 MIR200B C1orf159 FAM132A B3GALT6 UBE2J2 LINC01342 TTLL10-AS1
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10 B3GALT6 TNFRSF4 TNFRSF18 SDF4 TTLL10-AS1
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain PLEKHN1 MIR200A ISG15 FAM41C MIR429 LOC284600 TNFRSF4 TNFRSF18 SDF4 SAMD11 KLHL17 LOC100130417 LOC105378948 TTLL10 PERM1 NOC2L LOC100288175 HES4 RNF223 MIR200B C1orf159 AGRN LOC107985728 LINC01342 TTLL10-AS1
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication MIR200A MIR429 ACAP3 TNFRSF4 TNFRSF18 SDF4 MIR6726 FAM132A B3GALT6 LOC105378948 TTLL10 TAS1R3 MIR6727 CPTP LOC100288175 SCNN1D RNF223 MIR200B C1orf159 AGRN UBE2J2 PUSL1 CPSF3L LINC01342 TTLL10-AS1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LINC01128 ATAD3C ANKRD65 ATAD3B SAMD11 MIR6726 LINC00115 SLC35E2B KLHL17 LOC107985729 LOC100287934 LOC105378948 DVL1 NADK TTLL10 LOC102724312 MMP23B MIR6727 CPTP PERM1 NOC2L AURKAIP1 SCNN1D FNDC10 SLC35E2 RNF223 CCNL2 SSU72 LINC01342 PLEKHN1 LOC148413 MIR200A MIR6808 MMP23A MRPL20 TMEM240 ISG15 FAM41C MIR429 FAM87B LOC284600 ACAP3 TNFRSF4 TNFRSF18 SDF4 CDK11B VWA1 CDK11A LOC100130417 FAM132A B3GALT6 LOC100288069 TAS1R3 TMEM88B LOC100288175 HES4 MIR200B MXRA8 C1orf159 ATAD3A AGRN LOC107985728 UBE2J2 PUSL1 MIB2 CPSF3L TTLL10-AS1
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss PLEKHN1 MIR200A LINC01128 ISG15 FAM41C MIR429 FAM87B LOC284600 TNFRSF4 TNFRSF18 SDF4 SAMD11 LINC00115 KLHL17 LOC100130417 FAM132A B3GALT6 LOC105378948 TTLL10 PERM1 NOC2L LOC100288175 HES4 RNF223 MIR200B C1orf159 AGRN LOC107985728 UBE2J2 LINC01342 TTLL10-AS1
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion LOC148413 MIR200A MIR6808 MRPL20 TMEM240 ATAD3C MIR429 ANKRD65 ACAP3 TNFRSF4 TNFRSF18 SDF4 ATAD3B MIR6726 CDK11B VWA1 LOC107985729 FAM132A B3GALT6 DVL1 TTLL10 TAS1R3 LOC102724312 MMP23B TMEM88B MIR6727 CPTP AURKAIP1 SCNN1D FNDC10 MIR200B MXRA8 C1orf159 ATAD3A CCNL2 UBE2J2 PUSL1 MIB2 SSU72 CPSF3L LINC01342 TTLL10-AS1
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain PLEKHN1 LOC148413 MIR200A MIR6808 MRPL20 ISG15 MIR429 LOC284600 ANKRD65 ACAP3 TNFRSF4 TNFRSF18 SDF4 SAMD11 MIR6726 KLHL17 LOC100130417 FAM132A B3GALT6 LOC105378948 DVL1 TTLL10 TAS1R3 TMEM88B MIR6727 CPTP PERM1 NOC2L LOC100288175 AURKAIP1 HES4 SCNN1D RNF223 MIR200B MXRA8 C1orf159 AGRN LOC107985728 CCNL2 UBE2J2 PUSL1 CPSF3L LINC01342 TTLL10-AS1
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion PLEKHN1 MIR200A TTLL10 PERM1 ISG15 MIR429 NOC2L TNFRSF4 TNFRSF18 SDF4 LOC100288175 SAMD11 HES4 RNF223 MIR200B KLHL17 C1orf159 AGRN LOC105378948 LINC01342 TTLL10-AS1
nsv509257 Chr.1:1151955 - 1189470 on Build GRCh38 Insertion MIR200A TTLL10 MIR200B MIR429 TTLL10-AS1
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain MIR200A TTLL10 MIR6727 MIR429 ACAP3 TNFRSF4 TNFRSF18 SDF4 MIR6726 SCNN1D MIR200B FAM132A B3GALT6 UBE2J2 PUSL1 CPSF3L TTLL10-AS1

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More Information


Additional Information:

For this assay, SNP(s) [rs79648303] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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