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See other TMEM88B CNV Assays ›
Gene Symbol
TMEM88B
Assay Reference Genome
Location

Chr.1:1426368 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03376467_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 643965

Gene Name:

 transmembrane protein 88B

Gene Aliases:

 -

Location:

 Chr.1:1426128-1427787 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 1 - Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TMEM88B NM_001146685.1 NP_001140157.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss ANKRD65 LOC102724312 TMEM240 ATAD3A LOC107985729 VWA1 ATAD3C SSU72 TMEM88B ATAD3B
esv3577672 Chr.1:1417151 - 1508336 on Build GRCh38 Loss ANKRD65 LOC102724312 LOC107985729 VWA1 ATAD3C TMEM88B ATAD3B
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss FAM87B TAS1R3 SDF4 LOC107985728 TNFRSF4 KLHL17 MIB2 RNF223 MMP23A B3GALT6 SLC35E2 CPTP FNDC10 VWA1 MIR200B PLEKHN1 SCNN1D MIR200A PUSL1 AURKAIP1 FAM132A AGRN TMEM240 NADK ISG15 LOC107985729 MRPL20 FAM41C ATAD3C NOC2L MIR6808 LOC284600 TTLL10 LINC01342 CDK11A MXRA8 CCNL2 ATAD3B ACAP3 LOC148413 LOC102724312 LINC01128 LOC100130417 LOC100288175 TTLL10-AS1 MMP23B TNFRSF18 CDK11B SAMD11 TMEM88B CPSF3L PERM1 DVL1 ANKRD65 MIR6726 LINC00115 ATAD3A MIR6727 LOC100288069 MIR429 LOC100287934 HES4 SLC35E2B UBE2J2 LOC105378948 SSU72 C1orf159
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss FAM87B TAS1R3 DDX11L1 LOC107985728 MIB2 RNF223 MMP23A SLC35E2 CPTP FNDC10 WASH7P VWA1 LOC100134822 LOC105378589 LOC100132287 SCNN1D MIR200A PUSL1 AURKAIP1 AGRN LOC729737 TMEM240 NADK LOC107985729 ATAD3C NOC2L OR4F29 LOC105378592 LOC284600 TTLL10 CDK11A MIR6859-1 CCNL2 ATAD3B LOC105378949 LOC102724312 LOC100130417 TTLL10-AS1 MMP23B CDK11B SAMD11 CPSF3L PERM1 LOC100129534 DVL1 ANKRD65 TMEM52 FAAP20 LINC00115 LOC100288069 LOC100287934 SLC35E2B LOC107984841 UBE2J2 LOC105378948 C1orf159 SDF4 MTND1P23 TNFRSF4 KLHL17 GABRD B3GALT6 MIR6859-2 GNB1 MTND2P28 SKI MIR200B LOC102725121 MORN1 LOC105378591 LOC100133331 PLEKHN1 MIR1302-2 FAM132A CFAP74 ISG15 MRPL20 FAM41C FAM138A MIR6808 LINC01342 LOC105378947 LOC100506504 MXRA8 OR4F16 ACAP3 LOC148413 LINC01128 LOC100288175 TNFRSF18 LOC101928626 TMEM88B MIR6726 OR4F5 MIR6723 ATAD3A MIR6727 MIR429 HES4 PRKCZ SSU72 CALML6
nsv1126168 Chr.1:1426420 - 1428220 on Build GRCh38 Deletion TMEM88B
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion TAS1R3 MIR6808 SDF4 TTLL10 TNFRSF4 LINC01342 MIB2 MXRA8 CCNL2 B3GALT6 ATAD3B ACAP3 LOC148413 LOC102724312 CPTP FNDC10 TTLL10-AS1 MMP23B TNFRSF18 VWA1 MIR200B CDK11B TMEM88B CPSF3L DVL1 ANKRD65 MIR6726 ATAD3A MIR6727 SCNN1D MIR200A PUSL1 MIR429 AURKAIP1 FAM132A TMEM240 UBE2J2 LOC107985729 MRPL20 ATAD3C SSU72 C1orf159
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain TAS1R3 MIR6808 SDF4 LOC284600 TTLL10 LOC107985728 TNFRSF4 LINC01342 KLHL17 MXRA8 RNF223 CCNL2 B3GALT6 ACAP3 LOC148413 CPTP LOC100130417 LOC100288175 TTLL10-AS1 TNFRSF18 MIR200B SAMD11 TMEM88B CPSF3L PERM1 DVL1 ANKRD65 MIR6726 MIR6727 PLEKHN1 SCNN1D MIR200A PUSL1 MIR429 HES4 AURKAIP1 FAM132A AGRN UBE2J2 LOC105378948 ISG15 MRPL20 NOC2L C1orf159
nsv1009541 Chr.1:1306835 - 1518210 on Build GRCh38 Gain DVL1 TAS1R3 MIR6808 ANKRD65 ATAD3A MIR6727 MXRA8 PUSL1 CCNL2 ATAD3B AURKAIP1 ACAP3 LOC148413 LOC102724312 CPTP LOC107985729 MRPL20 VWA1 ATAD3C TMEM88B CPSF3L
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain ANKRD65 ATAD3A CCNL2 ATAD3B LOC148413 LOC102724312 TMEM240 LOC107985729 MRPL20 VWA1 ATAD3C SSU72 TMEM88B
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss MIB2 CDK11A GABRD MMP23A CCNL2 ATAD3B GNB1 SLC35E2 LOC105378949 LOC148413 LOC102724312 FNDC10 MMP23B VWA1 CDK11B TMEM88B ANKRD65 LOC105378589 TMEM52 LOC105378591 ATAD3A SLC35E2B CFAP74 TMEM240 NADK PRKCZ LOC107985729 MRPL20 ATAD3C SSU72 CALML6

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More Information


Additional Information:

For this assay, SNP(s) [rs72896277] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

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