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See other LOC101927401 CNV Assays ›
Gene Symbol
LOC101927401
Assay Reference Genome
Location

Chr.1:228365518 on build GRCh38
Cytoband
1q42.13
Assay ID Hs03385890_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 101927401

Gene Name:

 MAGE-like protein 2

Gene Aliases:

 -

Location:

 Chr.1:228360893-228369935 on Build GRCh38

Assay Gene Location:

 Within Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LOC101927401 XM_011544350.2 XP_011542652.1
XM_017003091.1 XP_016858580.1
XM_017003092.1 XP_016858581.1

Target Gene Details

Entrez Gene ID:

 84033

Gene Name:

 obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF

Gene Aliases:

 ARHGEF30, UNC89

Location:

 Chr.1:228208013-228381431 on Build GRCh38

Assay Gene Location:

 Within Exon 98
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
OBSCN NM_001098623.2 82 19095 NP_001092093.2
NM_001271223.2 93 21966 NP_001258152.2
XM_005273287.4 94 22352 XP_005273344.1
XM_005273291.4 94 22316 XP_005273348.1
XM_005273298.4 93 22043 XP_005273355.1
XM_005273307.4 89 21230 XP_005273364.1
XM_006711822.3 92 21776 XP_006711885.1
XM_006711823.3 92 21770 XP_006711886.1
XM_011544297.2 86 20186 XP_011542599.1
XM_011544299.2 85 19910 XP_011542601.1
XM_017002443.1 94 22397 XP_016857932.1
XM_017002444.1 94 22360 XP_016857933.1
XM_017002445.1 94 22394 XP_016857934.1
XM_017002446.1 94 22394 XP_016857935.1
XM_017002447.1 94 22394 XP_016857936.1
XM_017002448.1 94 22247 XP_016857937.1
XM_017002449.1 93 22134 XP_016857938.1
XM_017002450.1 93 22134 XP_016857939.1
XM_017002451.1 93 22134 XP_016857940.1
XM_017002452.1 93 22134 XP_016857941.1
XM_017002453.1 93 22121 XP_016857942.1
XM_017002454.1 93 22121 XP_016857943.1
XM_017002455.1 93 22121 XP_016857944.1
XM_017002456.1 93 22121 XP_016857945.1
XM_017002457.1 93 22121 XP_016857946.1
XM_017002458.1 92 21870 XP_016857947.1
XM_017002459.1 92 21870 XP_016857948.1
XM_017002460.1 92 21870 XP_016857949.1
XM_017002461.1 92 21857 XP_016857950.1
XM_017002462.1 92 21845 XP_016857951.1
XM_017002463.1 92 21824 XP_016857952.1
XM_017002464.1 92 21773 XP_016857953.1
XM_017002465.1 91 21606 XP_016857954.1
XM_017002466.1 91 21606 XP_016857955.1
XM_017002467.1 91 21606 XP_016857956.1
XM_017002468.1 90 21342 XP_016857957.1
XM_017002469.1 88 20814 XP_016857958.1
XM_017002470.1 83 19495 XP_016857959.1
AB046776.1 BAB13382.1
AB046859.2 22 2870 BAB13465.2
AM231061.1 8 997 CAJ76912.1
DQ400343.1 8 997

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv826908 Chr.1:227707685 - 228503399 on Build GRCh38 Gain GUK1 RNF187 IBA57-AS1 TRIM17 LOC101927401 WNT9A C1orf35 WNT3A MIR3620 C1orf145 LOC107985355 OBSCN IBA57 HIST3H3 LOC100506571 PRSS38 MIR6742 MRPL55 HIST3H2A ARF1 MIR5008 LOC101060022 MIR4666A SNAP47 GJC2 HIST3H2BB LOC105373289 JMJD4 TRIM11
nsv1013500 Chr.1:228271433 - 228713854 on Build GRCh38 Gain DUSP5P1 RNA5S17 RNA5S13 RNF187 RNA5S9 TRIM17 LOC101927401 RNA5S8 RNA5S2 RHOU RNA5S12 OBSCN RNA5S10 HIST3H3 RNA5S16 RNA5S5 MIR6742 RNA5S1 RNA5S11 HIST3H2A RNA5S7 RNA5S3 MIR4666A HIST3H2BB RNA5S15 RNA5S4 RNA5S6 BTNL10 RNA5S14 TRIM11 LOC105373132
nsv517545 Chr.1:228268446 - 228498298 on Build GRCh38 Loss MIR6742 HIST3H2BB HIST3H2A RNF187 OBSCN TRIM17 LOC101927401 HIST3H3 MIR4666A TRIM11
esv32853 Chr.1:227692415 - 228670462 on Build GRCh38 Gain GUK1 RNA5S17 RNA5S13 LOC101927401 RNA5S8 WNT9A C1orf35 RNA5S2 MIR3620 C1orf145 LOC107985355 RNA5S10 IBA57 HIST3H3 RNA5S16 RNA5S1 RNA5S11 RNA5S3 LOC101060022 SNAP47 RNA5S15 RNA5S4 BTNL10 TRIM11 DUSP5P1 RNF187 RNA5S9 IBA57-AS1 TRIM17 RHOU WNT3A RNA5S12 OBSCN LOC100506571 PRSS38 RNA5S5 MIR6742 MRPL55 HIST3H2A ARF1 MIR5008 RNA5S7 MIR4666A GJC2 HIST3H2BB LOC105373289 RNA5S6 JMJD4 RNA5S14 LOC105373132
nsv827019 Chr.1:228126466 - 228463319 on Build GRCh38 Loss MIR6742 HIST3H2A GUK1 IBA57-AS1 TRIM17 LOC101927401 MIR4666A GJC2 HIST3H2BB C1orf145 OBSCN IBA57 HIST3H3 TRIM11
nsv549295 Chr.1:228276547 - 228413937 on Build GRCh38 Loss MIR6742 OBSCN TRIM17 LOC101927401 TRIM11
nsv523935 Chr.1:227850423 - 228494048 on Build GRCh38 Loss GUK1 RNF187 IBA57-AS1 TRIM17 LOC101927401 WNT9A C1orf35 WNT3A MIR3620 C1orf145 LOC107985355 OBSCN IBA57 HIST3H3 LOC100506571 MIR6742 MRPL55 HIST3H2A ARF1 MIR5008 LOC101060022 MIR4666A GJC2 HIST3H2BB TRIM11
nsv508697 Chr.1:228352336 - 228434913 on Build GRCh38 Deletion MIR6742 OBSCN TRIM17 LOC101927401 HIST3H3 TRIM11
nsv952140 Chr.1:228331100 - 228380999 on Build GRCh38 Deletion OBSCN LOC101927401

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