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Gene Symbol
SLC38A3
Assay Reference Genome
Location

Chr.3:50216504 on build GRCh38
Cytoband
3p21.31
Assay ID Hs03460346_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10991

Gene Name:

 solute carrier family 38 member 3

Gene Aliases:

 G17, NAT1, SN1, SNAT3

Location:

 Chr.3:50205246-50220979 on Build GRCh38

Assay Gene Location:

 Within Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SLC38A3 NM_006841.5 NP_006832.1
XM_006712954.2 XP_006713017.1
AF244548.1 AAG15313.1
AK293801.1
AK299677.1
AK313461.1
BC042875.1 AAH42875.1
BX537382.1 CAD97624.1
CR456970.1 CAG33251.1
U49082.1 AAB47236.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv523560 Chr.3:50134964 - 50314769 on Build GRCh38 Loss NAT6 LSMEM2 SLC38A3 HYAL1 MIR5787 SEMA3B-AS1 GNAT1 SEMA3F-AS1 LOC107986035 MIR6872 GNAI2 IFRD2 SEMA3F SEMA3B MIR566 HYAL3
esv2759148 Chr.3:50161045 - 50333946 on Build GRCh38 Loss NAT6 LSMEM2 TUSC2 SLC38A3 HYAL1 RASSF1 MIR5787 SEMA3B-AS1 GNAT1 MIR6872 GNAI2 IFRD2 HYAL2 SEMA3F SEMA3B MIR566 HYAL3
dgv602n27 Chr.3:50140578 - 50287241 on Build GRCh38 Loss LSMEM2 SLC38A3 SEMA3F MIR5787 SEMA3B-AS1 GNAT1 SEMA3F-AS1 LOC107986035 SEMA3B MIR566 MIR6872 GNAI2
dgv8317n54 Chr.3:50206077 - 50383123 on Build GRCh38 Loss NAT6 LSMEM2 TUSC2 SLC38A3 HYAL1 RASSF1 MIR5787 SEMA3B-AS1 NPRL2 ZMYND10 TMEM115 RASSF1-AS1 MIR6872 GNAI2 IFRD2 CYB561D2 HYAL2 CACNA2D2 SEMA3B HYAL3
nsv515986 Chr.3:50066874 - 50254353 on Build GRCh38 Loss RBM5 RBM6 SLC38A3 SEMA3F MIR5787 RBM5-AS1 GNAT1 SEMA3F-AS1 LOC107986035 MIR566 GNAI2
dgv8316n54 Chr.3:50115923 - 50299991 on Build GRCh38 Loss RBM5 NAT6 LSMEM2 SLC38A3 HYAL1 MIR5787 SEMA3B-AS1 GNAT1 SEMA3F-AS1 LOC107986035 MIR6872 GNAI2 IFRD2 SEMA3F SEMA3B MIR566 HYAL3
nsv834692 Chr.3:50161052 - 50356033 on Build GRCh38 Loss NAT6 LSMEM2 TUSC2 SLC38A3 HYAL1 RASSF1 MIR5787 SEMA3B-AS1 GNAT1 NPRL2 ZMYND10 TMEM115 RASSF1-AS1 MIR6872 GNAI2 IFRD2 CYB561D2 HYAL2 SEMA3F SEMA3B MIR566 HYAL3
nsv834690 Chr.3:50064402 - 50263192 on Build GRCh38 Loss RBM5 RBM6 SLC38A3 SEMA3F MIR5787 RBM5-AS1 GNAT1 SEMA3F-AS1 LOC107986035 MIR566 GNAI2
nsv523662 Chr.3:50107518 - 50547568 on Build GRCh38 Loss RBM5 NAT6 LSMEM2 TUSC2 HYAL1 RASSF1 MIR5787 GNAT1 SEMA3F-AS1 NPRL2 LOC107986035 ZMYND10 RASSF1-AS1 MIR6872 GNAI2 CYB561D2 HYAL2 SEMA3F MIR566 HYAL3 SLC38A3 SEMA3B-AS1 TMEM115 IFRD2 CACNA2D2 SEMA3B
nsv470561 Chr.3:50121341 - 50547568 on Build GRCh38 Loss NAT6 LSMEM2 TUSC2 HYAL1 RASSF1 MIR5787 GNAT1 SEMA3F-AS1 NPRL2 LOC107986035 ZMYND10 RASSF1-AS1 MIR6872 GNAI2 CYB561D2 HYAL2 SEMA3F MIR566 HYAL3 SLC38A3 SEMA3B-AS1 TMEM115 IFRD2 CACNA2D2 SEMA3B
nsv460531 Chr.3:50210391 - 50399396 on Build GRCh38 Loss NAT6 LSMEM2 TUSC2 SLC38A3 HYAL1 RASSF1 MIR5787 SEMA3B-AS1 NPRL2 ZMYND10 TMEM115 RASSF1-AS1 MIR6872 GNAI2 IFRD2 CYB561D2 HYAL2 CACNA2D2 SEMA3B HYAL3
nsv954855 Chr.3:50152468 - 50439169 on Build GRCh38 Deletion NAT6 LSMEM2 TUSC2 HYAL1 RASSF1 MIR5787 GNAT1 SEMA3F-AS1 NPRL2 LOC107986035 ZMYND10 RASSF1-AS1 MIR6872 GNAI2 CYB561D2 HYAL2 SEMA3F MIR566 HYAL3 SLC38A3 SEMA3B-AS1 TMEM115 IFRD2 CACNA2D2 SEMA3B

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More Information


Additional Information:

For this assay, SNP(s) [rs140496530] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

amino acid transporter

Gene Ontology Categories:

Function(s) Process(es)


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