Hs03482026_cn

• Gene Symbol: PIGX
• Assay Reference Genome Location: Chr.3:196727504 on build GRCh38
• Cytoband: 3q29

Target Gene Details

• Entrez Gene ID: 54965
• Gene Name: phosphatidylinositol glycan anchor biosynthesis class X
• Gene Aliases: PIG-X
• Location: Chr.3:196712374-196736007 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PIGX	NM_001166304.1			NP_001159776.1
	NM_017861.3			NP_060331.3
	AA879458.1
	AK000529.1			BAA91233.1
	AK294340.1
	BC022542.1			AAH22542.1
	BG715890.1
	CN404010.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1014526	Chr.3:196645551 - 196733298 on Build GRCh38	Gain	CEP19 PIGX NRROS
nsv829828	Chr.3:196541250 - 196736770 on Build GRCh38	Loss	WDR53 CEP19 PIGX FBXO45 NRROS LINC01063
nsv1009975	Chr.3:196680410 - 196822871 on Build GRCh38	Gain	CEP19 PIGX PAK2
nsv1001045	Chr.3:196703082 - 196900384 on Build GRCh38	Gain	CEP19 PIGX PAK2 SENP5
nsv524832	Chr.3:196727148 - 196735630 on Build GRCh38	Loss	PIGX
nsv1003135	Chr.3:196621850 - 197012082 on Build GRCh38	Gain	NCBP2-AS2 CEP19 PIGX MELTF PIGZ PAK2 SENP5 NRROS LINC01063 MFI2-AS1 NCBP2
esv2763775	Chr.3:196727069 - 197015419 on Build GRCh38	Gain+Loss	NCBP2-AS2 PIGX MELTF PIGZ PAK2 SENP5 MFI2-AS1 NCBP2
nsv1014692	Chr.3:196515378 - 196804953 on Build GRCh38	Gain	WDR53 CEP19 PIGX FBXO45 PAK2 NRROS LINC01063

More Information

Additional Information:

For this assay, SNP(s) [rs73072718] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

preassembly of GPI anchor in ER membrane