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See other HLA-DMA CNV Assays ›
Gene Symbol
HLA-DMA
Assay Reference Genome
Location

Chr.6:32950165 on build GRCh38
Cytoband
6p21.32
Assay ID Hs03605834_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 3108

Gene Name:

 major histocompatibility complex, class II, DM alpha

Gene Aliases:

 D6S222E, DMA, HLADM, RING6

Location:

 Chr.6:32948614-32953122 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-DMA NM_006120.3 NP_006111.2
AK291858.1
AK298081.1 3 762
AU100342.1
BC011447.1 AAH11447.1
BC026279.1 AAH26279.1
CR450324.1 CAG29320.1
X62744.1 CAA44606.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2759417 Chr.6:32898012 - 32996319 on Build GRCh38 Gain LOC100294145 HLA-DMB HLA-DMA BRD2
nsv483081 Chr.6:32882976 - 33031504 on Build GRCh38 Loss HLA-DOA LOC100294145 HLA-DMB HLA-DMA BRD2
nsv1161376 Chr.6:32913750 - 32953997 on Build GRCh38 Duplication HLA-DMB HLA-DMA
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion NELFE HCG25 TNXA TNXB AIF1 SNORD84 DXO NOTCH4 LST1 SNORD117 HLA-DOA HLA-DPB1 ZBTB22 LOC100287329 SAPCD1 MIR6721 SNORD52 SLC44A4 MIR1236 NCR3 GPSM3 HLA-DRB1 RXRB SNORA38 ATP6V1G2 HSPA1B MIR6833 RING1 HLA-DQA2 FKBPL DDX39B-AS1 EGFL8 AGPAT1 HLA-DQB2 SNORD48 WDR46 MIR6834 LOC100507547 C6orf47 LY6G6C B3GALT4 VARS ATF6B LTA RGL2 SAPCD1-AS1 C6orf25 SYNGAP1 LY6G6D MIR6832 HLA-DQB1 PBX2 CLIC1 LOC100294145 VPS52 LTB HSD17B8 HLA-DPA1 HCG24 PPT2 PHF1 SKIV2L ZBTB9 LY6G6E MCCD1 TNF C6orf10 HLA-DRA CFB NEU1 HLA-DQB1-AS1 AGER PFDN6 LSM2 HCG26 C4B PRRT1 PRRC2A COL11A2 VWA7 EHMT2 DAXX ABHD16A CSNK2B PSMB8 ZBTB12 BTNL2 DDAH2 C6orf48 APOM CUTA NFKBIL1 PSMB9 RPS18 TAPBP STK19 PSMB8-AS1 HLA-DRB5 BRD2 MSH5-SAPCD1 KIFC1 HCP5 LY6G5B MIR4646 PPP1R2P1 MICB HLA-DMA HSPA1L ATP6V1G2-DDX39B LOC102725068 MIR219A1 CYP21A1P DDX39B MIR6873 C2 C2-AS1 BAG6 LY6G6F TAP2 LY6G5C HLA-DPB2 HSPA1A HLA-DRB6 HLA-DMB MSH5 GPANK1 HLA-DQA1 SLC39A7 PPT2-EGFL8 TAP1 C4A MIR3135B RNF5 HLA-DOB LOC101929163 HCG23 CYP21A2 MIR5004
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion NELFE HCG25 TNXA TNXB AIF1 SNORD84 DXO NOTCH4 LST1 SNORD117 HLA-DOA HLA-DPB1 ZBTB22 LOC100287329 SAPCD1 MIR6721 SNORD52 SLC44A4 MIR1236 NCR3 GPSM3 HLA-DRB1 RXRB SNORA38 ATP6V1G2 HSPA1B MIR6833 RING1 HLA-DQA2 FKBPL DDX39B-AS1 EGFL8 AGPAT1 HLA-DQB2 SNORD48 WDR46 MIR6834 LOC100507547 C6orf47 LY6G6C B3GALT4 VARS ATF6B LTA RGL2 SAPCD1-AS1 C6orf25 SYNGAP1 LY6G6D MIR6832 HLA-DQB1 PBX2 CLIC1 LOC100294145 VPS52 LTB HSD17B8 HLA-DPA1 HCG24 PPT2 PHF1 SKIV2L ZBTB9 LY6G6E MCCD1 TNF C6orf10 HLA-DRA CFB NEU1 HLA-DQB1-AS1 AGER PFDN6 LSM2 HCG26 C4B PRRT1 PRRC2A COL11A2 VWA7 EHMT2 DAXX ABHD16A CSNK2B PSMB8 ZBTB12 BTNL2 DDAH2 C6orf48 APOM CUTA NFKBIL1 PSMB9 RPS18 TAPBP STK19 PSMB8-AS1 HLA-DRB5 BRD2 MSH5-SAPCD1 KIFC1 HCP5 LY6G5B MIR4646 PPP1R2P1 MICB HLA-DMA HSPA1L ATP6V1G2-DDX39B LOC102725068 MIR219A1 CYP21A1P DDX39B MIR6873 C2 C2-AS1 BAG6 LY6G6F TAP2 LY6G5C HLA-DPB2 HSPA1A HLA-DRB6 HLA-DMB MSH5 GPANK1 HLA-DQA1 SLC39A7 PPT2-EGFL8 TAP1 C4A MIR3135B RNF5 HLA-DOB LOC101929163 HCG23 CYP21A2 MIR5004
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion HCG25 PPP1R2P1 HLA-DQB1-AS1 HLA-DMA PFDN6 B3GALT4 MIR219A1 HLA-DOA HLA-DPB1 COL11A2 MIR6873 RGL2 ZBTB22 DAXX PSMB8 TAP2 HLA-DPB2 SYNGAP1 HLA-DQB1 LOC100294145 VPS52 HLA-DMB RXRB HLA-DQA1 SLC39A7 HSD17B8 HLA-DPA1 TAP1 RING1 CUTA HLA-DQA2 HCG24 MIR3135B PSMB9 RPS18 TAPBP HLA-DOB PHF1 PSMB8-AS1 BRD2 KIFC1 ZBTB9 HLA-DQB2 MIR5004 WDR46 MIR6834
nsv830633 Chr.6:32829085 - 32995634 on Build GRCh38 Loss PSMB9 LOC100294145 HLA-DMB PPP1R2P1 PSMB8-AS1 HLA-DMA PSMB8 BRD2 TAP2 TAP1

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